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    F42A10.5 Protein CDV3 homolog [ Caenorhabditis elegans ]

    Gene ID: 175872, updated on 9-Dec-2024

    Summary

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    Official Symbol
    F42A10.5
    Official Full Name
    Protein CDV3 homolog
    Primary source
    WormBase:WBGene00018341
    Locus tag
    CELE_F42A10.5
    See related
    AllianceGenome:WB:WBGene00018341
    Gene type
    protein coding
    RefSeq status
    REVIEWED
    Organism
    Caenorhabditis elegans (strain: Bristol N2)
    Lineage
    Eukaryota; Metazoa; Ecdysozoa; Nematoda; Chromadorea; Rhabditida; Rhabditina; Rhabditomorpha; Rhabditoidea; Rhabditidae; Peloderinae; Caenorhabditis
    Summary
    Predicted to be active in cytoplasm. Is expressed in head neurons; intestine; nerve ring; spermatheca; and tail. [provided by Alliance of Genome Resources, Dec 2024]
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    Genomic context

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    See F42A10.5 in Genome Data Viewer
    Location:
    chromosome: III
    Exon count:
    3
    Sequence:
    Chromosome: III; NC_003281.10 (6171222..6172800, complement)

    Chromosome III - NC_003281.10Genomic Context describing neighboring genes Neighboring gene FERM domain-containing protein Neighboring gene Gamma-glutamylcyclotransferase family protein Neighboring gene Eukaryotic elongation factor 2 kinase Neighboring gene ncRNA Neighboring gene ABC transporter domain-containing protein Neighboring gene MD-2-related lipid-recognition domain-containing protein

    Genomic regions, transcripts, and products

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    Genomic Sequence:
    NC_003281.10

    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. The Caenorhabditis elegans RDE-10/RDE-11 complex regulates RNAi by promoting secondary siRNA amplification. Zhang C, et al. Curr Biol, 2012 May 22. PMID 22542102, Free PMC Article
    2. Depletion of endogenously biotinylated carboxylases enhances the sensitivity of TurboID-mediated proximity labeling in Caenorhabditis elegans. Artan M, et al. J Biol Chem, 2022 Sep. PMID 35933017, Free PMC Article
    3. Interactome analysis of Caenorhabditis elegans synapses by TurboID-based proximity labeling. Artan M, et al. J Biol Chem, 2021 Sep. PMID 34416233, Free PMC Article
    4. Novel LOTUS-domain proteins are organizational hubs that recruit C. elegans Vasa to germ granules. Cipriani PG, et al. Elife, 2021 Jul 5. PMID 34223818, Free PMC Article
    5. A map of the interactome network of the metazoan C. elegans. Li S, et al. Science, 2004 Jan 23. PMID 14704431, Free PMC Article

    See all (7) citations in PubMed

    GeneRIFs: Gene References Into Functions

    Interactions

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    Products Interactant Other Gene Complex Source Pubs Description

    General gene information

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    Markers

    Homology

    Gene Ontology Provided by WormBase

    Component Evidence Code Pubs
    is_active_in cytoplasm IBA
    Inferred from Biological aspect of Ancestor
    more info
    		  

    General protein information

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    Preferred Names
    Protein CDV3 homolog
    NP_498338.1
    • Confirmed by transcript evidence

    NCBI Reference Sequences (RefSeq)

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    Genome Annotation

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference assembly

    Genomic

    1. NC_003281.10 Reference assembly

      Range
      6171222..6172800 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. NM_065937.7 → NP_498338.1  Protein CDV3 homolog [Caenorhabditis elegans]

      See identical proteins and their annotated locations for NP_498338.1

      Status: REVIEWED

      UniProtKB/TrEMBL
      Q20310
      Conserved Domains (1) summary
      pfam15359
      Location:62 → 170
      CDV3; Carnitine deficiency-associated protein 3
    Nucleotide Protein
    Heading Accession and Version

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