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    sumv-1 Protein sumv-1 [ Caenorhabditis elegans ]

    Gene ID: 175720, updated on 9-Dec-2024

    Summary

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    Official Symbol
    sumv-1
    Official Full Name
    Protein sumv-1
    Primary source
    WormBase:WBGene00016409
    Locus tag
    CELE_C34E10.8
    See related
    AllianceGenome:WB:WBGene00016409
    Gene type
    protein coding
    RefSeq status
    REVIEWED
    Organism
    Caenorhabditis elegans (strain: Bristol N2)
    Lineage
    Eukaryota; Metazoa; Ecdysozoa; Nematoda; Chromadorea; Rhabditida; Rhabditina; Rhabditomorpha; Rhabditoidea; Rhabditidae; Peloderinae; Caenorhabditis
    Summary
    Located in cytoplasm; neuron projection; and nucleus. Is expressed in hypodermis; intestine; and neurons. Orthologous to human INO80D (INO80 complex subunit D). [provided by Alliance of Genome Resources, Dec 2024]
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    Genomic context

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    See sumv-1 in Genome Data Viewer
    Location:
    chromosome: III
    Exon count:
    19
    Sequence:
    Chromosome: III; NC_003281.10 (5249075..5254187, complement)

    Chromosome III - NC_003281.10Genomic Context describing neighboring genes Neighboring gene Peroxisome biogenesis factor 10;Tryptophan--tRNA ligase, mitochondrial Neighboring gene Neurogenic differentiation factor 1 Neighboring gene Protein CLEC16A homolog Neighboring gene GPN-loop GTPase 1

    Genomic regions, transcripts, and products

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    Genomic Sequence:
    NC_003281.10

    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. Evidence of a MOF histone acetyltransferase-containing NSL complex in C. elegans. Hoe M, et al. Worm, 2014 Oct-Dec. PMID 26430553, Free PMC Article
    2. SUMV-1 antagonizes the activity of synthetic multivulva genes in Caenorhabditis elegans. Yücel D, et al. Dev Biol, 2014 Aug 15. PMID 24882710
    3. Diverse chromatin remodeling genes antagonize the Rb-involved SynMuv pathways in C. elegans. Cui M, et al. PLoS Genet, 2006 May. PMID 16710447, Free PMC Article
    4. ITSN-1 controls vesicle recycling at the neuromuscular junction and functions in parallel with DAB-1. Wang W, et al. Traffic, 2008 May. PMID 18298590, Free PMC Article
    5. Protein interaction mapping in C. elegans using proteins involved in vulval development. Walhout AJ, et al. Science, 2000 Jan 7. PMID 10615043

    See all (15) citations in PubMed

    GeneRIFs: Gene References Into Functions

    Interactions

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    Products Interactant Other Gene Complex Source Pubs Description

    General gene information

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    Markers

    Homology

    Gene Ontology Provided by WormBase

    Component Evidence Code Pubs
    located_in axon IEA
    Inferred from Electronic Annotation
    more info
    		  
    located_in cell projection IEA
    Inferred from Electronic Annotation
    more info
    		  
    located_in cytoplasm IDA
    Inferred from Direct Assay
    more info
    		 PubMed 
    located_in cytoplasm IEA
    Inferred from Electronic Annotation
    more info
    		  
    located_in neuron projection IDA
    Inferred from Direct Assay
    more info
    		 PubMed 
    is_active_in nucleus IBA
    Inferred from Biological aspect of Ancestor
    more info
    		  
    located_in nucleus IDA
    Inferred from Direct Assay
    more info
    		 PubMed 
    located_in nucleus IEA
    Inferred from Electronic Annotation
    more info
    		  

    General protein information

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    Preferred Names
    Protein sumv-1
    NP_498116.2
    • Confirmed by transcript evidence

    NCBI Reference Sequences (RefSeq)

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    Genome Annotation

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference assembly

    Genomic

    1. NC_003281.10 Reference assembly

      Range
      5249075..5254187 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. NM_065715.5 → NP_498116.2  Protein sumv-1 [Caenorhabditis elegans]

      See identical proteins and their annotated locations for NP_498116.2

      Status: REVIEWED

      UniProtKB/Swiss-Prot
      P46582
      Conserved Domains (2) summary
      pfam13891
      Location:253 → 302
      zf-C3Hc3H; Potential DNA-binding domain
      pfam14181
      Location:779 → 921
      YqfQ; YqfQ-like protein
    Nucleotide Protein
    Heading Accession and Version
    Protein Accession Links
    GenPept Link UniProtKB Link
    P46582.2

    Gene LinkOut

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