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    • Showing Current items.

    col-79 Putative cuticle collagen 79 [ Caenorhabditis elegans ]

    Gene ID: 174650, updated on 9-Dec-2024

    Summary

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    Official Symbol
    col-79
    Official Full Name
    Putative cuticle collagen 79
    Primary source
    WormBase:WBGene00000655
    Locus tag
    CELE_C09G5.3
    See related
    AllianceGenome:WB:WBGene00000655
    Gene type
    protein coding
    RefSeq status
    REVIEWED
    Organism
    Caenorhabditis elegans (strain: Bristol N2)
    Lineage
    Eukaryota; Metazoa; Ecdysozoa; Nematoda; Chromadorea; Rhabditida; Rhabditina; Rhabditomorpha; Rhabditoidea; Rhabditidae; Peloderinae; Caenorhabditis
    Summary
    Predicted to be a structural constituent of cuticle. Predicted to be part of collagen trimer. [provided by Alliance of Genome Resources, Dec 2024]
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    Genomic context

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    See col-79 in Genome Data Viewer
    Location:
    chromosome: II
    Exon count:
    2
    Sequence:
    Chromosome: II; NC_003280.10 (10703613..10704572)

    Chromosome II - NC_003280.10Genomic Context describing neighboring genes Neighboring gene putative gamma-butyrobetaine dioxygenase Neighboring gene Glycine receptor subunit beta-type 4 Neighboring gene 2-(3-amino-3-carboxypropyl)histidine synthase subunit 2 Neighboring gene Cuticle collagen 39 Neighboring gene Putative cuticle collagen 80

    Genomic regions, transcripts, and products

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    Genomic Sequence:
    NC_003280.10

    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. OrthoList: a compendium of C. elegans genes with human orthologs. Shaye DD, et al. PLoS One, 2011. PMID 21647448, Free PMC Article
    2. OrthoList 2: A New Comparative Genomic Analysis of Human and Caenorhabditis elegans Genes. Kim W, et al. Genetics, 2018 Oct. PMID 30120140, Free PMC Article
    3. Genome sequence of the nematode C. elegans: a platform for investigating biology. C. elegans Sequencing Consortium. Science, 1998 Dec 11. PMID 9851916

    GeneRIFs: Gene References Into Functions

    General gene information

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    Markers

    Homology

    Gene Ontology Provided by WormBase

    Function Evidence Code Pubs
    enables structural constituent of cuticle IEA
    Inferred from Electronic Annotation
    more info
    		  
    Component Evidence Code Pubs
    part_of collagen trimer IEA
    Inferred from Electronic Annotation
    more info
    		  

    General protein information

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    Preferred Names
    Putative cuticle collagen 79
    NP_496308.1
    • Confirmed by transcript evidence

    NCBI Reference Sequences (RefSeq)

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    Genome Annotation

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference assembly

    Genomic

    1. NC_003280.10 Reference assembly

      Range
      10703613..10704572
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. NM_063907.3 → NP_496308.1  Putative cuticle collagen 79 [Caenorhabditis elegans]

      See identical proteins and their annotated locations for NP_496308.1

      Status: REVIEWED

      UniProtKB/Swiss-Prot
      Q09233
      Conserved Domains (2) summary
      pfam01391
      Location:103 → 176
      Collagen; Collagen triple helix repeat (20 copies)
      smart01088
      Location:5 → 57
      Col_cuticle_N; Nematode cuticle collagen N-terminal domain
    Nucleotide Protein
    Heading Accession and Version
    Protein Accession Links
    GenPept Link UniProtKB Link
    Q09233.1

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