U.S. flag

An official website of the United States government

Format

Send to:

Choose Destination

Links from GEO Profiles

    • Showing Current items.

    Y45F3A.9 rRNA methyltransferase 1, mitochondrial [ Caenorhabditis elegans ]

    Gene ID: 3565184, updated on 9-Dec-2024

    Summary

    Go to the top of the page Help
    Official Symbol
    Y45F3A.9
    Official Full Name
    rRNA methyltransferase 1, mitochondrial
    Primary source
    WormBase:WBGene00012864
    Locus tag
    CELE_Y45F3A.9
    See related
    AllianceGenome:WB:WBGene00012864
    Gene type
    protein coding
    RefSeq status
    REVIEWED
    Organism
    Caenorhabditis elegans (strain: Bristol N2)
    Lineage
    Eukaryota; Metazoa; Ecdysozoa; Nematoda; Chromadorea; Rhabditida; Rhabditina; Rhabditomorpha; Rhabditoidea; Rhabditidae; Peloderinae; Caenorhabditis
    Summary
    Predicted to enable rRNA (guanine) methyltransferase activity. Predicted to be involved in rRNA modification. Predicted to be located in cytoplasm. Predicted to be active in mitochondrion. Orthologous to human MRM1 (mitochondrial rRNA methyltransferase 1). [provided by Alliance of Genome Resources, Dec 2024]
    NEW
    Try the new Gene table
    Try the new Transcript table

    Genomic context

    Go to the top of the page Help
    See Y45F3A.9 in Genome Data Viewer
    Location:
    chromosome: III
    Exon count:
    6
    Sequence:
    Chromosome: III; NC_003281.10 (10592724..10595166, complement)

    Chromosome III - NC_003281.10Genomic Context describing neighboring genes Neighboring gene 4F5 domain-containing protein Neighboring gene pseudo Neighboring gene ShKT domain-containing protein Neighboring gene Sjogren's syndrome/scleroderma autoantigen 1 (Autoantigen p27) Neighboring gene Ectopic P granules protein 6

    Genomic regions, transcripts, and products

    Go to the top of the page Help
    Genomic Sequence:
    NC_003281.10

    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

    Go to the top of the pageHelp

    Related articles in PubMed

    1. Genome sequence of the nematode C. elegans: a platform for investigating biology. C. elegans Sequencing Consortium. Science, 1998 Dec 11. PMID 9851916

    GeneRIFs: Gene References Into Functions

    General gene information

    Go to the top of the page Help

    Markers

    Homology

    Gene Ontology Provided by WormBase

    Function Evidence Code Pubs
    enables RNA binding IEA
    Inferred from Electronic Annotation
    more info
    		  
    enables RNA methyltransferase activity IEA
    Inferred from Electronic Annotation
    more info
    		  
    enables methyltransferase activity IEA
    Inferred from Electronic Annotation
    more info
    		  
    enables rRNA (guanine) methyltransferase activity IBA
    Inferred from Biological aspect of Ancestor
    more info
    		  
    Process Evidence Code Pubs
    involved_in RNA processing IEA
    Inferred from Electronic Annotation
    more info
    		  
    involved_in methylation IEA
    Inferred from Electronic Annotation
    more info
    		  
    involved_in rRNA methylation IEA
    Inferred from Electronic Annotation
    more info
    		  
    involved_in rRNA modification IBA
    Inferred from Biological aspect of Ancestor
    more info
    		  
    Component Evidence Code Pubs
    located_in cytoplasm IEA
    Inferred from Electronic Annotation
    more info
    		  
    is_active_in mitochondrion IBA
    Inferred from Biological aspect of Ancestor
    more info
    		  
    located_in mitochondrion IEA
    Inferred from Electronic Annotation
    more info
    		  

    General protein information

    Go to the top of the page Help
    Preferred Names
    rRNA methyltransferase 1, mitochondrial
    NP_499333.1
    • Confirmed by transcript evidence

    NCBI Reference Sequences (RefSeq)

    Go to the top of the page Help

    NEW Try the new Transcript table

    Genome Annotation

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference assembly

    Genomic

    1. NC_003281.10 Reference assembly

      Range
      10592724..10595166 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. NM_066932.6 → NP_499333.1  rRNA methyltransferase 1, mitochondrial [Caenorhabditis elegans]

      See identical proteins and their annotated locations for NP_499333.1

      Status: REVIEWED

      UniProtKB/TrEMBL
      Q9XWY8
      Conserved Domains (2) summary
      cd18105
      Location:132 → 287
      SpoU-like_MRM1; SAM-dependent rRNA methylase related to MRM1
      pfam08032
      Location:45 → 124
      SpoU_sub_bind; RNA 2'-O ribose methyltransferase substrate binding
    Nucleotide Protein
    Heading Accession and Version

    Gene LinkOut

    The following LinkOut resources are supplied by external providers. These providers are responsible for maintaining the links.

    Molecular Biology Databases
    Research Materials
    Tools