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    K08F4.3 Translocon-associated protein subunit beta [ Caenorhabditis elegans ]

    Gene ID: 177881, updated on 9-Dec-2024

    Summary

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    Official Symbol
    K08F4.3
    Official Full Name
    Translocon-associated protein subunit beta
    Primary source
    WormBase:WBGene00010678
    Locus tag
    CELE_K08F4.3
    See related
    AllianceGenome:WB:WBGene00010678
    Gene type
    protein coding
    RefSeq status
    REVIEWED
    Organism
    Caenorhabditis elegans (strain: Bristol N2)
    Lineage
    Eukaryota; Metazoa; Ecdysozoa; Nematoda; Chromadorea; Rhabditida; Rhabditina; Rhabditomorpha; Rhabditoidea; Rhabditidae; Peloderinae; Caenorhabditis
    Summary
    Predicted to be located in endoplasmic reticulum membrane. Orthologous to human SSR2 (signal sequence receptor subunit 2). [provided by Alliance of Genome Resources, Dec 2024]
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    Genomic context

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    See K08F4.3 in Genome Data Viewer
    Location:
    chromosome: IV
    Exon count:
    4
    Sequence:
    Chromosome: IV; NC_003282.8 (10129257..10130244)

    Chromosome IV - NC_003282.8Genomic Context describing neighboring genes Neighboring gene Ras GTPase-activating protein-binding protein gtbp-1 Neighboring gene ncRNA Neighboring gene Putative sodium-dependent excitatory amino acid transporter glt-3 Neighboring gene Uncharacterized protein

    Genomic regions, transcripts, and products

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    Genomic Sequence:
    NC_003282.8

    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. Germline Maintenance Through the Multifaceted Activities of GLH/Vasa in Caenorhabditis elegans P Granules. Marnik EA, et al. Genetics, 2019 Nov. PMID 31506335, Free PMC Article
    2. Novel LOTUS-domain proteins are organizational hubs that recruit C. elegans Vasa to germ granules. Cipriani PG, et al. Elife, 2021 Jul 5. PMID 34223818, Free PMC Article
    3. Genome sequence of the nematode C. elegans: a platform for investigating biology. C. elegans Sequencing Consortium. Science, 1998 Dec 11. PMID 9851916

    GeneRIFs: Gene References Into Functions

    Interactions

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    Products Interactant Other Gene Complex Source Pubs Description

    General gene information

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    Markers

    Homology

    Gene Ontology Provided by WormBase

    Component Evidence Code Pubs
    located_in endoplasmic reticulum IEA
    Inferred from Electronic Annotation
    more info
    		  
    located_in endoplasmic reticulum membrane IEA
    Inferred from Electronic Annotation
    more info
    		  
    located_in membrane IEA
    Inferred from Electronic Annotation
    more info
    		  

    General protein information

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    Preferred Names
    Translocon-associated protein subunit beta
    NP_501843.1
    • Confirmed by transcript evidence

    NCBI Reference Sequences (RefSeq)

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    Genome Annotation

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference assembly

    Genomic

    1. NC_003282.8 Reference assembly

      Range
      10129257..10130244
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. NM_069442.6 → NP_501843.1  Translocon-associated protein subunit beta [Caenorhabditis elegans]

      See identical proteins and their annotated locations for NP_501843.1

      Status: REVIEWED

      UniProtKB/TrEMBL
      Q21352
      Conserved Domains (1) summary
      pfam05753
      Location:1 → 180
      TRAP_beta; Translocon-associated protein beta (TRAPB)
    Nucleotide Protein
    Heading Accession and Version

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