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    Y59A8B.8 Gamma-soluble NSF attachment protein [ Caenorhabditis elegans ]

    Gene ID: 180182, updated on 9-Dec-2024

    Summary

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    Official Symbol
    Y59A8B.8
    Official Full Name
    Gamma-soluble NSF attachment protein
    Primary source
    WormBase:WBGene00013345
    Locus tag
    CELE_Y59A8B.8
    See related
    AllianceGenome:WB:WBGene00013345
    Gene type
    protein coding
    RefSeq status
    REVIEWED
    Organism
    Caenorhabditis elegans (strain: Bristol N2)
    Lineage
    Eukaryota; Metazoa; Ecdysozoa; Nematoda; Chromadorea; Rhabditida; Rhabditina; Rhabditomorpha; Rhabditoidea; Rhabditidae; Peloderinae; Caenorhabditis
    Summary
    Predicted to enable soluble NSF attachment protein activity and syntaxin binding activity. Predicted to be involved in intracellular protein transport. Predicted to be located in membrane. Predicted to be part of SNARE complex. Orthologous to human NAPG (NSF attachment protein gamma). [provided by Alliance of Genome Resources, Dec 2024]
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    Genomic context

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    See Y59A8B.8 in Genome Data Viewer
    Location:
    chromosome: V
    Exon count:
    7
    Sequence:
    Chromosome: V; NC_003283.11 (18062163..18066307, complement)

    Chromosome V - NC_003283.11Genomic Context describing neighboring genes Neighboring gene DUF727 domain-containing protein Neighboring gene EB1 C-terminal domain-containing protein Neighboring gene K Homology domain-containing protein;KH domain-containing protein Neighboring gene ncRNA Neighboring gene ncRNA

    Genomic regions, transcripts, and products

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    Genomic Sequence:
    NC_003283.11

    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. Interactome analysis of Caenorhabditis elegans synapses by TurboID-based proximity labeling. Artan M, et al. J Biol Chem, 2021 Sep. PMID 34416233, Free PMC Article
    2. Novel LOTUS-domain proteins are organizational hubs that recruit C. elegans Vasa to germ granules. Cipriani PG, et al. Elife, 2021 Jul 5. PMID 34223818, Free PMC Article
    3. Genome sequence of the nematode C. elegans: a platform for investigating biology. C. elegans Sequencing Consortium. Science, 1998 Dec 11. PMID 9851916

    GeneRIFs: Gene References Into Functions

    Interactions

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    Products Interactant Other Gene Complex Source Pubs Description

    General gene information

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    Homology

    Gene Ontology Provided by WormBase

    Function Evidence Code Pubs
    enables soluble NSF attachment protein activity IBA
    Inferred from Biological aspect of Ancestor
    more info
    		  
    enables syntaxin binding IBA
    Inferred from Biological aspect of Ancestor
    more info
    		  
    Process Evidence Code Pubs
    involved_in intracellular protein transport IBA
    Inferred from Biological aspect of Ancestor
    more info
    		  
    involved_in intracellular protein transport IEA
    Inferred from Electronic Annotation
    more info
    		  
    involved_in protein transport IEA
    Inferred from Electronic Annotation
    more info
    		  
    Component Evidence Code Pubs
    part_of SNARE complex IBA
    Inferred from Biological aspect of Ancestor
    more info
    		  
    located_in membrane IEA
    Inferred from Electronic Annotation
    more info
    		  

    General protein information

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    Preferred Names
    Gamma-soluble NSF attachment protein
    NP_507527.2
    • Confirmed by transcript evidence

    NCBI Reference Sequences (RefSeq)

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    Genome Annotation

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference assembly

    Genomic

    1. NC_003283.11 Reference assembly

      Range
      18062163..18066307 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. NM_075126.7 → NP_507527.2  Gamma-soluble NSF attachment protein [Caenorhabditis elegans]

      See identical proteins and their annotated locations for NP_507527.2

      Status: REVIEWED

      UniProtKB/TrEMBL
      Q9NEQ8
      Conserved Domains (3) summary
      cd15832
      Location:33 → 70
      SNAP; TPR repeat [structural motif]
      pfam13424
      Location:37 → 108
      TPR_12; Tetratricopeptide repeat
      cl24038
      Location:9 → 276
      SNAP; Soluble N-ethylmaleimide-sensitive factor (NSF) Attachment Protein family
    Nucleotide Protein
    Heading Accession and Version

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