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    W04G5.5 PAW domain-containing protein [ Caenorhabditis elegans ]

    Gene ID: 189201, updated on 9-Dec-2024

    Summary

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    Official Symbol
    W04G5.5
    Official Full Name
    PAW domain-containing protein
    Primary source
    WormBase:WBGene00012266
    Locus tag
    CELE_W04G5.5
    See related
    AllianceGenome:WB:WBGene00012266
    Gene type
    protein coding
    RefSeq status
    REVIEWED
    Organism
    Caenorhabditis elegans (strain: Bristol N2)
    Lineage
    Eukaryota; Metazoa; Ecdysozoa; Nematoda; Chromadorea; Rhabditida; Rhabditina; Rhabditomorpha; Rhabditoidea; Rhabditidae; Peloderinae; Caenorhabditis
    Summary
    Predicted to enable peptide-N4-(N-acetyl-beta-glucosaminyl)asparagine amidase activity. Predicted to be involved in glycoprotein catabolic process and positive regulation of BMP signaling pathway. Predicted to be located in cytoplasm and membrane. Predicted to be active in cytosol and nucleus. [provided by Alliance of Genome Resources, Dec 2024]
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    Genomic context

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    See W04G5.5 in Genome Data Viewer
    Location:
    chromosome: I
    Exon count:
    11
    Sequence:
    Chromosome: I; NC_003279.8 (11634613..11636910)

    Chromosome I - NC_003279.8Genomic Context describing neighboring genes Neighboring gene Ovule protein Neighboring gene PAW domain-containing protein Neighboring gene RAB family Neighboring gene Protein kinase domain-containing protein Neighboring gene ncRNA Neighboring gene pseudo

    Genomic regions, transcripts, and products

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    Genomic Sequence:
    NC_003279.8

    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. EPIC: software toolkit for elution profile-based inference of protein complexes. Hu LZ, et al. Nat Methods, 2019 Aug. PMID 31308550, Free PMC Article
    2. Genome sequence of the nematode C. elegans: a platform for investigating biology. C. elegans Sequencing Consortium. Science, 1998 Dec 11. PMID 9851916

    GeneRIFs: Gene References Into Functions

    Interactions

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    Products Interactant Other Gene Complex Source Pubs Description

    General gene information

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    Markers

    Gene Ontology Provided by WormBase

    Process Evidence Code Pubs
    involved_in glycoprotein catabolic process IEA
    Inferred from Electronic Annotation
    more info
    		  
    Component Evidence Code Pubs
    located_in cytoplasm IEA
    Inferred from Electronic Annotation
    more info
    		  
    located_in membrane IEA
    Inferred from Electronic Annotation
    more info
    		  

    General protein information

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    Preferred Names
    PAW domain-containing protein
    NP_492967.4
    • Partially confirmed by transcript evidence

    NCBI Reference Sequences (RefSeq)

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    Genome Annotation

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference assembly

    Genomic

    1. NC_003279.8 Reference assembly

      Range
      11634613..11636910
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. NM_060566.4 → NP_492967.4  PAW domain-containing protein [Caenorhabditis elegans]

      See identical proteins and their annotated locations for NP_492967.4

      Status: REVIEWED

      UniProtKB/TrEMBL
      O18170
      Conserved Domains (1) summary
      smart00613
      Location:255 → 342
      PAW; domain present in PNGases and other hypothetical proteins
    Nucleotide Protein
    Heading Accession and Version

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