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    tag-297 ShKT domain-containing protein [ Caenorhabditis elegans ]

    Gene ID: 175123, updated on 9-Dec-2024

    Summary

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    Official Symbol
    tag-297
    Official Full Name
    ShKT domain-containing protein
    Primary source
    WormBase:WBGene00007999
    Locus tag
    CELE_C38C6.6
    See related
    AllianceGenome:WB:WBGene00007999
    Gene type
    protein coding
    RefSeq status
    REVIEWED
    Organism
    Caenorhabditis elegans (strain: Bristol N2)
    Lineage
    Eukaryota; Metazoa; Ecdysozoa; Nematoda; Chromadorea; Rhabditida; Rhabditina; Rhabditomorpha; Rhabditoidea; Rhabditidae; Peloderinae; Caenorhabditis
    Summary
    Predicted to be located in membrane. Is expressed in head neurons and hypodermis. [provided by Alliance of Genome Resources, Dec 2024]
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    Genomic context

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    See tag-297 in Genome Data Viewer
    Location:
    chromosome: II
    Exon count:
    5
    Sequence:
    Chromosome: II; NC_003280.10 (14627630..14630121)

    Chromosome II - NC_003280.10Genomic Context describing neighboring genes Neighboring gene MLt-TeN (mlt-10) related Neighboring gene tRNA Neighboring gene ncRNA Neighboring gene MLt-TeN (mlt-10) related Neighboring gene pseudo Neighboring gene Uncharacterized protein Neighboring gene Serpentine receptor class epsilon-13

    Genomic regions, transcripts, and products

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    Genomic Sequence:
    NC_003280.10

    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. Novel LOTUS-domain proteins are organizational hubs that recruit C. elegans Vasa to germ granules. Cipriani PG, et al. Elife, 2021 Jul 5. PMID 34223818, Free PMC Article
    2. EPIC: software toolkit for elution profile-based inference of protein complexes. Hu LZ, et al. Nat Methods, 2019 Aug. PMID 31308550, Free PMC Article
    3. Genome sequence of the nematode C. elegans: a platform for investigating biology. C. elegans Sequencing Consortium. Science, 1998 Dec 11. PMID 9851916

    GeneRIFs: Gene References Into Functions

    Interactions

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    Products Interactant Other Gene Complex Source Pubs Description

    General gene information

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    Markers

    Homology

    Gene Ontology Provided by WormBase

    Component Evidence Code Pubs
    located_in membrane IEA
    Inferred from Electronic Annotation
    more info
    		  

    General protein information

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    Preferred Names
    ShKT domain-containing protein
    NP_497039.1
    • Confirmed by transcript evidence

    NCBI Reference Sequences (RefSeq)

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    Genome Annotation

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference assembly

    Genomic

    1. NC_003280.10 Reference assembly

      Range
      14627630..14630121
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. NM_064638.8 → NP_497039.1  ShKT domain-containing protein [Caenorhabditis elegans]

      See identical proteins and their annotated locations for NP_497039.1

      Status: REVIEWED

      UniProtKB/TrEMBL
      G5EFR0
      Conserved Domains (1) summary
      cl21541
      Location:1 → 101
      OstA; OstA-like protein
    Nucleotide Protein
    Heading Accession and Version

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