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    C09E7.8 RING-type domain-containing protein [ Caenorhabditis elegans ]

    Gene ID: 175931, updated on 9-Dec-2024

    Summary

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    Official Symbol
    C09E7.8
    Official Full Name
    RING-type domain-containing protein
    Primary source
    WormBase:WBGene00015642
    Locus tag
    CELE_C09E7.8
    See related
    AllianceGenome:WB:WBGene00015642
    Gene type
    protein coding
    RefSeq status
    REVIEWED
    Organism
    Caenorhabditis elegans (strain: Bristol N2)
    Lineage
    Eukaryota; Metazoa; Ecdysozoa; Nematoda; Chromadorea; Rhabditida; Rhabditina; Rhabditomorpha; Rhabditoidea; Rhabditidae; Peloderinae; Caenorhabditis
    Summary
    Predicted to be involved in innate immune response. Is expressed in head; intestine; pharynx; and rectal gland cell. [provided by Alliance of Genome Resources, Dec 2024]
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    Genomic context

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    See C09E7.8 in Genome Data Viewer
    Location:
    chromosome: III
    Exon count:
    18
    Sequence:
    Chromosome: III; NC_003281.10 (6553627..6558587, complement)

    Chromosome III - NC_003281.10Genomic Context describing neighboring genes Neighboring gene pseudo Neighboring gene RING-type domain-containing protein Neighboring gene pseudo Neighboring gene ncRNA Neighboring gene Uncharacterized protein

    Genomic regions, transcripts, and products

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    Genomic Sequence:
    NC_003281.10

    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. A modified TurboID approach identifies tissue-specific centriolar components in C. elegans. Holzer E, et al. PLoS Genet, 2022 Apr. PMID 35442950, Free PMC Article
    2. Genome sequence of the nematode C. elegans: a platform for investigating biology. C. elegans Sequencing Consortium. Science, 1998 Dec 11. PMID 9851916

    GeneRIFs: Gene References Into Functions

    Interactions

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    Products Interactant Other Gene Complex Source Pubs Description

    General gene information

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    Markers

    Homology

    Gene Ontology Provided by WormBase

    Process Evidence Code Pubs
    involved_in innate immune response IBA
    Inferred from Biological aspect of Ancestor
    more info
    		  

    General protein information

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    Preferred Names
    RING-type domain-containing protein
    NP_498447.2
    • Confirmed by transcript evidence
    NP_871695.2
    • Confirmed by transcript evidence

    NCBI Reference Sequences (RefSeq)

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    Genome Annotation

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference assembly

    Genomic

    1. NC_003281.10 Reference assembly

      Range
      6553627..6558587 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. NM_066046.5 → NP_498447.2  RING-type domain-containing protein [Caenorhabditis elegans]

      See identical proteins and their annotated locations for NP_498447.2

      Status: REVIEWED

      UniProtKB/TrEMBL
      H2KYM7
      Conserved Domains (3) summary
      COG1196
      Location:626 → 855
      Smc; Chromosome segregation ATPase [Cell cycle control, cell division, chromosome partitioning]
      cd00162
      Location:1060 → 1100
      RING_Ubox; RING-H2 finger (C3H2C3-type) [structural motif]
      pfam13639
      Location:1058 → 1101
      zf-RING_2; Ring finger domain

    2. NM_181966.6 → NP_871695.2  RING-type domain-containing protein [Caenorhabditis elegans]

      See identical proteins and their annotated locations for NP_871695.2

      Status: REVIEWED

      UniProtKB/TrEMBL
      Q8IAB8
      Conserved Domains (3) summary
      COG1196
      Location:321 → 550
      Smc; Chromosome segregation ATPase [Cell cycle control, cell division, chromosome partitioning]
      cd00162
      Location:755 → 795
      RING_Ubox; RING-H2 finger (C3H2C3-type) [structural motif]
      pfam13639
      Location:753 → 796
      zf-RING_2; Ring finger domain
    Nucleotide Protein
    Heading Accession and Version

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