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    Y54G11A.7 Tetratricopeptide repeat protein 38 [ Caenorhabditis elegans ]

    Gene ID: 175084, updated on 9-Dec-2024

    Summary

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    Official Symbol
    Y54G11A.7
    Official Full Name
    Tetratricopeptide repeat protein 38
    Primary source
    WormBase:WBGene00013216
    Locus tag
    CELE_Y54G11A.7
    See related
    AllianceGenome:WB:WBGene00013216
    Gene type
    protein coding
    RefSeq status
    REVIEWED
    Organism
    Caenorhabditis elegans (strain: Bristol N2)
    Lineage
    Eukaryota; Metazoa; Ecdysozoa; Nematoda; Chromadorea; Rhabditida; Rhabditina; Rhabditomorpha; Rhabditoidea; Rhabditidae; Peloderinae; Caenorhabditis
    Summary
    Is expressed in hypodermis; intestine; nervous system; pharyngeal-intestinal valve; and pharynx. Orthologous to human TTC38 (tetratricopeptide repeat domain 38). [provided by Alliance of Genome Resources, Dec 2024]
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    Genomic context

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    See Y54G11A.7 in Genome Data Viewer
    Location:
    chromosome: II
    Exon count:
    6
    Sequence:
    Chromosome: II; NC_003280.10 (14297305..14299620)

    Chromosome II - NC_003280.10Genomic Context describing neighboring genes Neighboring gene pseudo Neighboring gene Tetratricopeptide repeat protein 38 Neighboring gene Peroxisomal catalase 1 Neighboring gene Catalase-2 Neighboring gene Catalase

    Genomic regions, transcripts, and products

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    Genomic Sequence:
    NC_003280.10

    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. A map of the interactome network of the metazoan C. elegans. Li S, et al. Science, 2004 Jan 23. PMID 14704431, Free PMC Article
    2. EPIC: software toolkit for elution profile-based inference of protein complexes. Hu LZ, et al. Nat Methods, 2019 Aug. PMID 31308550, Free PMC Article
    3. Genome sequence of the nematode C. elegans: a platform for investigating biology. C. elegans Sequencing Consortium. Science, 1998 Dec 11. PMID 9851916

    GeneRIFs: Gene References Into Functions

    Interactions

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    Products Interactant Other Gene Complex Source Pubs Description

    General gene information

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    Markers

    Homology

    General protein information

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    Preferred Names
    Tetratricopeptide repeat protein 38
    NP_496976.2
    • Confirmed by transcript evidence

    NCBI Reference Sequences (RefSeq)

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    Genome Annotation

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference assembly

    Genomic

    1. NC_003280.10 Reference assembly

      Range
      14297305..14299620
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. NM_064575.7 → NP_496976.2  Tetratricopeptide repeat protein 38 [Caenorhabditis elegans]

      See identical proteins and their annotated locations for NP_496976.2

      Status: REVIEWED

      UniProtKB/TrEMBL
      Q9XW01
      Conserved Domains (1) summary
      cd05804
      Location:63 → 422
      StaR_like; StaR_like; a well-conserved protein found in bacteria, plants, and animals. A family member from Streptomyces toyocaensis, StaR is part of a gene cluster involved in the biosynthesis of glycopeptide antibiotics (GPAs), specifically A47934. It has been ...
    Nucleotide Protein
    Heading Accession and Version

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