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    T12G3.4 Strictosidine synthase conserved region domain-containing protein [ Caenorhabditis elegans ]

    Gene ID: 178141, updated on 9-Dec-2024

    Summary

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    Official Symbol
    T12G3.4
    Official Full Name
    Strictosidine synthase conserved region domain-containing protein
    Primary source
    WormBase:WBGene00011739
    Locus tag
    CELE_T12G3.4
    See related
    AllianceGenome:WB:WBGene00011739
    Gene type
    protein coding
    RefSeq status
    REVIEWED
    Organism
    Caenorhabditis elegans (strain: Bristol N2)
    Lineage
    Eukaryota; Metazoa; Ecdysozoa; Nematoda; Chromadorea; Rhabditida; Rhabditina; Rhabditomorpha; Rhabditoidea; Rhabditidae; Peloderinae; Caenorhabditis
    Summary
    Predicted to enable hydrolase activity. Predicted to be involved in biosynthetic process. Predicted to be located in membrane. Orthologous to human APMAP (adipocyte plasma membrane associated protein). [provided by Alliance of Genome Resources, Dec 2024]
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    Genomic context

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    See T12G3.4 in Genome Data Viewer
    Location:
    chromosome: IV
    Exon count:
    3
    Sequence:
    Chromosome: IV; NC_003282.8 (12048256..12049928)

    Chromosome IV - NC_003282.8Genomic Context describing neighboring genes Neighboring gene CULLIN_2 domain-containing protein;Protein kinase domain-containing protein Neighboring gene ncRNA Neighboring gene ncRNA Neighboring gene Beta-1,3-galactosyltransferase bre-5;Hexosyltransferase Neighboring gene Transcription elongation factor SPT5 Neighboring gene Glycolipid transfer protein domain-containing protein Neighboring gene ncRNA

    Genomic regions, transcripts, and products

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    Genomic Sequence:
    NC_003282.8

    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. Characterization of the intracellular neurexin interactome by in vivo proximity ligation suggests its involvement in presynaptic actin assembly. Schaan Profes M, et al. PLoS Biol, 2024 Jan. PMID 38252619, Free PMC Article
    2. A modified TurboID approach identifies tissue-specific centriolar components in C. elegans. Holzer E, et al. PLoS Genet, 2022 Apr. PMID 35442950, Free PMC Article
    3. Novel LOTUS-domain proteins are organizational hubs that recruit C. elegans Vasa to germ granules. Cipriani PG, et al. Elife, 2021 Jul 5. PMID 34223818, Free PMC Article
    4. Genome sequence of the nematode C. elegans: a platform for investigating biology. C. elegans Sequencing Consortium. Science, 1998 Dec 11. PMID 9851916

    GeneRIFs: Gene References Into Functions

    Interactions

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    Products Interactant Other Gene Complex Source Pubs Description

    General gene information

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    Markers

    Homology

    Gene Ontology Provided by WormBase

    Function Evidence Code Pubs
    enables hydrolase activity IBA
    Inferred from Biological aspect of Ancestor
    more info
    		  
    enables strictosidine synthase activity IEA
    Inferred from Electronic Annotation
    more info
    		  
    Process Evidence Code Pubs
    involved_in biosynthetic process IEA
    Inferred from Electronic Annotation
    more info
    		  
    Component Evidence Code Pubs
    located_in membrane IEA
    Inferred from Electronic Annotation
    more info
    		  

    General protein information

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    Preferred Names
    Strictosidine synthase conserved region domain-containing protein
    NP_502282.1
    • Confirmed by transcript evidence

    NCBI Reference Sequences (RefSeq)

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    Genome Annotation

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference assembly

    Genomic

    1. NC_003282.8 Reference assembly

      Range
      12048256..12049928
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. NM_069881.9 → NP_502282.1  Strictosidine synthase conserved region domain-containing protein [Caenorhabditis elegans]

      See identical proteins and their annotated locations for NP_502282.1

      Status: REVIEWED

      UniProtKB/TrEMBL
      Q22437
      Conserved Domains (2) summary
      COG3386
      Location:112 → 349
      YvrE; Sugar lactone lactonase YvrE [Carbohydrate transport and metabolism]
      cl22863
      Location:224 → 315
      Str_synth; Strictosidine synthase
    Nucleotide Protein
    Heading Accession and Version

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