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    KRT16P3 keratin 16 pseudogene 3 [ Homo sapiens (human) ]

    Gene ID: 644945, updated on 10-Dec-2024

    Summary

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    Official Symbol
    KRT16P3provided by HGNC
    Official Full Name
    keratin 16 pseudogene 3provided by HGNC
    Primary source
    HGNC:HGNC:37808
    See related
    Ensembl:ENSG00000291196 AllianceGenome:HGNC:37808
    Gene type
    pseudo
    RefSeq status
    VALIDATED
    Organism
    Homo sapiens
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini; Catarrhini; Hominidae; Homo
    Also known as
    KERSMCR
    Expression
    Biased expression in esophagus (RPKM 10.2), skin (RPKM 2.1) and 1 other tissue See more
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    Genomic context

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    See KRT16P3 in Genome Data Viewer
    Location:
    17p11.2
    Exon count:
    7
    Annotation release Status Assembly Chr Location
    RS_2024_08 current GRCh38.p14 (GCF_000001405.40) 17 NC_000017.11 (20501513..20504498, complement)
    RS_2024_08 current T2T-CHM13v2.0 (GCF_009914755.1) 17 NC_060941.1 (20450179..20453164, complement)
    RS_2024_09 previous assembly GRCh37.p13 (GCF_000001405.25) 17 NC_000017.10 (20404826..20407811, complement)

    Chromosome 17 - NC_000017.11Genomic Context describing neighboring genes Neighboring gene tyrosine 3-monooxygenase/tryptophan 5-monooxygenase activation protein epsilon pseudogene 3 Neighboring gene keratin 16 pseudogene 5 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr17:20405227-20405727 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr17:20406945-20407530 Neighboring gene H3K27ac-H3K4me1 hESC enhancer GRCh37_chr17:20408115-20408700 Neighboring gene H3K27ac-H3K4me1 hESC enhancer GRCh37_chr17:20408701-20409284 Neighboring gene OCT4-NANOG-H3K27ac-H3K4me1 hESC enhancer GRCh37_chr17:20409871-20410454 Neighboring gene OCT4-NANOG-H3K27ac-H3K4me1 hESC enhancer GRCh37_chr17:20410455-20411040 Neighboring gene proximal SMS-REP block C recombination region Neighboring gene H3K4me1 hESC enhancer GRCh37_chr17:20418042-20418841 Neighboring gene keratin 17 pseudogene 6 Neighboring gene keratin 17 pseudogene 7

    Genomic regions, transcripts, and products

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    Go to nucleotide: Graphics FASTA GenBank

    Expression

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    • Project title: Tissue-specific circular RNA induction during human fetal development
    • Description: 35 human fetal samples from 6 tissues (3 - 7 replicates per tissue) collected between 10 and 20 weeks gestational time were sequenced using Illumina TruSeq Stranded Total RNA
    • BioProject: PRJNA270632
    • Publication: PMID 26076956
    • Analysis date: Mon Apr 2 22:54:59 2018

    Bibliography

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    Related articles in PubMed

    1. Diversification of transcriptional modulation: large-scale identification and characterization of putative alternative promoters of human genes. Kimura K, et al. Genome Res, 2006 Jan. PMID 16344560, Free PMC Article
    2. Generation and initial analysis of more than 15,000 full-length human and mouse cDNA sequences. Strausberg RL, et al. Proc Natl Acad Sci U S A, 2002 Dec 24. PMID 12477932, Free PMC Article

    GeneRIFs: Gene References Into Functions

    Phenotypes

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    Review eQTL and phenotype association data in this region using PheGenI

    Variation

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    See studies and variants in dbVar

    See Variation Viewer (GRCh37.p13)

    See Variation Viewer (GRCh38)

    General gene information

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    Markers

    Clone Names

    • MGC102966

    NCBI Reference Sequences (RefSeq)

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    RefSeqs maintained independently of Annotated Genomes

    These reference sequences exist independently of genome builds. Explain

    These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

    RNA

    1. NR_029393.1 RNA Sequence

      Status: VALIDATED

      Source sequence(s)
      AC015818, BC110641, DB013784
      Related
      ENST00000580621.5

    RefSeqs of Annotated Genomes: GCF_000001405.40-RS_2024_08

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference GRCh38.p14 Primary Assembly

    Genomic

    1. NC_000017.11 Reference GRCh38.p14 Primary Assembly

      Range
      20501513..20504498 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    Alternate T2T-CHM13v2.0

    Genomic

    1. NC_060941.1 Alternate T2T-CHM13v2.0

      Range
      20450179..20453164 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    Suppressed Reference Sequence(s)

    The following Reference Sequences have been suppressed. Explain

    1. NG_007162.2: Suppressed sequence

      Description
      NG_007162.2: This RefSeq was permanently suppressed because it is now thought that this gene is a transcribed pseudogene.

    2. NG_026155.1: Suppressed sequence

      Description
      NG_026155.1: This RefSeq was permanently suppressed because it is now thought that this gene is a transcribed pseudogene.
    Nucleotide Protein
    Heading Accession and Version

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