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    LINC02733 long intergenic non-protein coding RNA 2733 [ Homo sapiens (human) ]

    Gene ID: 100507521, updated on 10-Dec-2024

    Summary

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    Official Symbol
    LINC02733provided by HGNC
    Official Full Name
    long intergenic non-protein coding RNA 2733provided by HGNC
    Primary source
    HGNC:HGNC:54250
    See related
    Ensembl:ENSG00000255553 AllianceGenome:HGNC:54250
    Gene type
    ncRNA
    RefSeq status
    VALIDATED
    Organism
    Homo sapiens
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini; Catarrhini; Hominidae; Homo
    Expression
    Low expression observed in reference dataset See more
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    Genomic context

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    See LINC02733 in Genome Data Viewer
    Location:
    11q12.3
    Exon count:
    4
    Annotation release Status Assembly Chr Location
    RS_2024_08 current GRCh38.p14 (GCF_000001405.40) 11 NC_000011.10 (62049856..62082322, complement)
    RS_2024_08 current T2T-CHM13v2.0 (GCF_009914755.1) 11 NC_060935.1 (62039492..62071945, complement)
    RS_2024_09 previous assembly GRCh37.p13 (GCF_000001405.25) 11 NC_000011.9 (61817328..61849794, complement)

    Chromosome 11 - NC_000011.10Genomic Context describing neighboring genes Neighboring gene ATAC-STARR-seq lymphoblastoid silent region 3409 Neighboring gene ATAC-STARR-seq lymphoblastoid silent region 3410 Neighboring gene ATAC-STARR-seq lymphoblastoid active region 4807 Neighboring gene ATAC-STARR-seq lymphoblastoid active region 4808 Neighboring gene NFE2L2 motif-containing MPRA enhancer 20 Neighboring gene ATAC-STARR-seq lymphoblastoid active region 4809 Neighboring gene uncharacterized LOC399900 Neighboring gene ReSE screen-validated silencer GRCh37_chr11:61745853-61746069 Neighboring gene ferritin heavy chain 1 Neighboring gene H3K27ac-H3K4me1 hESC enhancer GRCh37_chr11:61768209-61768961 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr11:61780893-61781393 Neighboring gene ribosomal protein S2 pseudogene 37 Neighboring gene ATAC-STARR-seq lymphoblastoid active region 4810 Neighboring gene OCT4-NANOG-H3K4me1 hESC enhancer GRCh37_chr11:61797863-61798406 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr11:61798407-61798950 Neighboring gene P300/CBP strongly-dependent group 1 enhancer GRCh37_chr11:61811723-61812922 Neighboring gene NANOG hESC enhancer GRCh37_chr11:61870547-61871048 Neighboring gene uncharacterized LOC124902681 Neighboring gene ATAC-STARR-seq lymphoblastoid active region 4811 Neighboring gene ATAC-STARR-seq lymphoblastoid active region 4812 Neighboring gene H3K27ac hESC enhancer GRCh37_chr11:61891773-61892354 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr11:61895837-61896336 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr11:61897363-61897864 Neighboring gene inner centromere protein Neighboring gene ReSE screen-validated silencer GRCh37_chr11:61912955-61913116

    Genomic regions, transcripts, and products

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    Go to nucleotide: Graphics FASTA GenBank

    Expression

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    • Project title: Tissue-specific circular RNA induction during human fetal development
    • Description: 35 human fetal samples from 6 tissues (3 - 7 replicates per tissue) collected between 10 and 20 weeks gestational time were sequenced using Illumina TruSeq Stranded Total RNA
    • BioProject: PRJNA270632
    • Publication: PMID 26076956
    • Analysis date: Mon Apr 2 22:54:59 2018

    Bibliography

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    GeneRIFs: Gene References Into Functions

    Phenotypes

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    Review eQTL and phenotype association data in this region using PheGenI

    Variation

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    See studies and variants in dbVar

    See Variation Viewer (GRCh37.p13)

    See Variation Viewer (GRCh38)

    General gene information

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    Markers

    NCBI Reference Sequences (RefSeq)

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    RefSeqs maintained independently of Annotated Genomes

    These reference sequences exist independently of genome builds. Explain

    These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

    RNA

    1. NR_183616.1 RNA Sequence

      Status: VALIDATED

      Source sequence(s)
      AP003733
      Related
      ENST00000658933.1

    2. NR_183617.1 RNA Sequence

      Status: VALIDATED

      Source sequence(s)
      AP003733
      Related
      ENST00000524942.1

    RefSeqs of Annotated Genomes: GCF_000001405.40-RS_2024_08

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference GRCh38.p14 Primary Assembly

    Genomic

    1. NC_000011.10 Reference GRCh38.p14 Primary Assembly

      Range
      62049856..62082322 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    Alternate T2T-CHM13v2.0

    Genomic

    1. NC_060935.1 Alternate T2T-CHM13v2.0

      Range
      62039492..62071945 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)
    Nucleotide Protein
    Heading Accession and Version

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