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    9130008F23Rik RIKEN cDNA 9130008F23 gene [ Mus musculus (house mouse) ]

    Gene ID: 71583, updated on 27-Nov-2024

    Summary

    Official Symbol
    9130008F23Rikprovided by MGI
    Official Full Name
    RIKEN cDNA 9130008F23 geneprovided by MGI
    Primary source
    MGI:MGI:1918833
    See related
    Ensembl:ENSMUSG00000054951 AllianceGenome:MGI:1918833
    Gene type
    protein coding
    RefSeq status
    VALIDATED
    Organism
    Mus musculus
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha; Muroidea; Muridae; Murinae; Mus; Mus
    Summary
    Acts upstream of or within blastocyst hatching. Is expressed in early conceptus. Orthologous to human C6orf141 (chromosome 6 open reading frame 141). [provided by Alliance of Genome Resources, Nov 2024]
    Expression
    Broad expression in bladder adult (RPKM 5.8), large intestine adult (RPKM 3.9) and 17 other tissues See more
    Orthologs
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    Genomic context

    See 9130008F23Rik in Genome Data Viewer
    Location:
    17 B2; 17 19.54 cM
    Exon count:
    2
    Annotation release Status Assembly Chr Location
    RS_2024_02 current GRCm39 (GCF_000001635.27) 17 NC_000083.7 (41186373..41191449, complement)
    108.20200622 previous assembly GRCm38.p6 (GCF_000001635.26) 17 NC_000083.6 (40875482..40880558, complement)

    Chromosome 17 - NC_000083.7Genomic Context describing neighboring genes Neighboring gene Rhesus blood group-associated A glycoprotein Neighboring gene STARR-seq mESC enhancer starr_42548 Neighboring gene STARR-seq mESC enhancer starr_42549 Neighboring gene cytochrome P450, family 2, subfamily ac, polypeptide 1, pseudogene Neighboring gene glycine-N-acyltransferase-like 3 Neighboring gene CapStarr-seq enhancer MGSCv37_chr17:41071423-41071532 Neighboring gene centromere protein Q Neighboring gene methylmalonyl-Coenzyme A mutase

    Genomic regions, transcripts, and products

    Expression

    • Project title: Mouse ENCODE transcriptome data
    • Description: RNA profiling data sets generated by the Mouse ENCODE project.
    • BioProject: PRJNA66167
    • Publication: PMID 25409824
    • Analysis date: n/a

    General protein information

    Preferred Names
    uncharacterized protein C6orf141 homolog

    NCBI Reference Sequences (RefSeq)

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    RefSeqs maintained independently of Annotated Genomes

    These reference sequences exist independently of genome builds. Explain

    These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

    mRNA and Protein(s)

    1. NM_027834.3NP_082110.1  uncharacterized protein C6orf141 homolog

      See identical proteins and their annotated locations for NP_082110.1

      Status: VALIDATED

      Source sequence(s)
      AK018601, AK033670
      Consensus CDS
      CCDS50110.1
      UniProtKB/TrEMBL
      Q9D2Z6
      Related
      ENSMUSP00000069779.3, ENSMUST00000068258.3

    RefSeqs of Annotated Genomes: GCF_000001635.27-RS_2024_02

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference GRCm39 C57BL/6J

    Genomic

    1. NC_000083.7 Reference GRCm39 C57BL/6J

      Range
      41186373..41191449 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)