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    itprid2 ITPR interacting domain containing 2 [ Danio rerio (zebrafish) ]

    Gene ID: 553255, updated on 2-Nov-2024

    Summary

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    Official Symbol
    itprid2provided by ZNC
    Official Full Name
    ITPR interacting domain containing 2provided by ZNC
    Primary source
    ZFIN:ZDB-GENE-090824-1
    See related
    Ensembl:ENSDARG00000038938 AllianceGenome:ZFIN:ZDB-GENE-090824-1
    Gene type
    protein coding
    RefSeq status
    MODEL
    Organism
    Danio rerio
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Actinopterygii; Neopterygii; Teleostei; Ostariophysi; Cypriniformes; Danionidae; Danioninae; Danio
    Also known as
    ssfa2; si:dkey-165l22.3
    Summary
    Predicted to enable signaling receptor binding activity. Orthologous to human ITPRID2 (ITPR interacting domain containing 2). [provided by Alliance of Genome Resources, Nov 2024]
    Annotation information
    Annotation category: partial on reference assembly
    Orthologs
    human mouse all
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    Genomic context

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    See itprid2 in Genome Data Viewer
    Location:
    chromosome: 9
    Exon count:
    18
    Annotation release Status Assembly Chr Location
    RS_2024_08 current GRCz11 (GCF_000002035.6) 9 NC_007120.7 (44304981..44420377)
    105 previous assembly GRCz10 (GCF_000002035.5) 9 NC_007120.6 (44503234..44618635)

    Chromosome 9 - NC_007120.7Genomic Context describing neighboring genes Neighboring gene CERK like autophagy regulator Neighboring gene uncharacterized LOC110440049 Neighboring gene neuronal differentiation 1 Neighboring gene uncharacterized LOC101882689 Neighboring gene protein phosphatase 1, regulatory (inhibitor) subunit 1C Neighboring gene phosphodiesterase 1A, calmodulin-dependent

    Genomic regions, transcripts, and products

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    Go to nucleotide: Graphics FASTA GenBank

    Expression

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    • Project title: Sequencing the Zebrafish transcriptome from a range of tissues and developmental stages
    • Description: Sequencing the Zebrafish transcriptome from a range of tissues and developmental stages
    • BioProject: PRJEB1986
    • Analysis date: Fri Dec 8 19:48:10 2017

    Bibliography

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    Related articles in PubMed

    1. CERKL knockdown causes retinal degeneration in zebrafish. Riera M, et al. PLoS One, 2013. PMID 23671706, Free PMC Article
    2. RFX transcription factors are essential for hearing in mice. Elkon R, et al. Nat Commun, 2015 Oct 15. PMID 26469318, Free PMC Article
    3. Generation and initial analysis of more than 15,000 full-length human and mouse cDNA sequences. Strausberg RL, et al. Proc Natl Acad Sci U S A, 2002 Dec 24. PMID 12477932, Free PMC Article
    4. Gene evolution and gene expression after whole genome duplication in fish: the PhyloFish database. Pasquier J, et al. BMC Genomics, 2016 May 18. PMID 27189481, Free PMC Article

    GeneRIFs: Gene References Into Functions

    General gene information

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    Markers

    Homology

    Gene Ontology Provided by ZFIN

    Function Evidence Code Pubs
    enables signaling receptor binding IEA
    Inferred from Electronic Annotation
    more info
    		  

    General protein information

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    Preferred Names
    protein ITPRID2
    Names
    sperm specific antigen 2

    NCBI Reference Sequences (RefSeq)

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    RefSeqs of Annotated Genomes: GCF_000002035.6-RS_2024_08

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference GRCz11 Primary Assembly

    Genomic

    1. NC_007120.7 Reference GRCz11 Primary Assembly

      Range
      44304981..44420377
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_017357843.3 → XP_017213332.1  protein ITPRID2

      UniProtKB/TrEMBL
      A0A8M6Z880
      Related
      ENSDARP00000124900.1, ENSDART00000148826.2
      Conserved Domains (3) summary
      pfam14722
      Location:128 → 272
      KRAP_IP3R_bind; Ki-ras-induced actin-interacting protein-IP3R-interacting domain
      pfam14723
      Location:920 → 1071
      SSFA2_C; Sperm-specific antigen 2 C-terminus
      cl25764
      Location:813 → 953
      PAT1; Topoisomerase II-associated protein PAT1

    2. XM_021479016.2 → XP_021334691.1  protein ITPRID2

      UniProtKB/TrEMBL
      A0A8M6Z880
      Conserved Domains (3) summary
      pfam14722
      Location:128 → 272
      KRAP_IP3R_bind; Ki-ras-induced actin-interacting protein-IP3R-interacting domain
      pfam14723
      Location:920 → 1071
      SSFA2_C; Sperm-specific antigen 2 C-terminus
      cl25764
      Location:813 → 953
      PAT1; Topoisomerase II-associated protein PAT1
    Nucleotide Protein Strain
    Heading Accession and Version

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