Serpina4 serpin family A member 4 [Rattus norvegicus (Norway rat)] - Gene

Summary

Official Symbol: Serpina4provided by RGD
Official Full Name: serpin family A member 4provided by RGD
Primary source: RGD:708581
See related: EnsemblRapid:ENSRNOG00000009788 AllianceGenome:RGD:708581
Gene type: protein coding
RefSeq status: PROVISIONAL
Organism: Rattus norvegicus
Lineage: Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha; Muroidea; Muridae; Murinae; Rattus
Summary: Predicted to enable serine-type endopeptidase inhibitor activity. Predicted to be involved in negative regulation of endopeptidase activity. Predicted to be active in extracellular space. Orthologous to human SERPINA4 (serpin family A member 4). [provided by Alliance of Genome Resources, Nov 2024]
Expression: Restricted expression toward (RPKM 3037.2) See more
Orthologs: human all
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Genomic context

Location:: 6q32

Exon count:: 6

Annotation release	Status	Assembly	Chr	Location
RS_2024_02	current	GRCr8 (GCF_036323735.1)	6	NC_086024.1 (128764738..128773858)
RS_2023_06	previous assembly	mRatBN7.2 (GCF_015227675.2)	6	NC_051341.1 (122999970..123009083)
106	previous assembly	Rnor_6.0 (GCF_000001895.5)	6	NC_005105.4 (127743883..127753047)

Chromosome 6 - NC_086024.1 Genomic Context describing neighboring genes

Genomic regions, transcripts, and products

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Genomic Sequence:

Go to nucleotide: Graphics FASTA GenBank

Expression

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See details

Project title: A rat RNA-Seq transcriptomic BodyMap across 11 organs and 4 developmental stages
Description: 320 RNA samples isolated from 11 organs (adrenal gland, brain, heart, kidney, liver, lung, muscle, spleen, thymus, and testes or uterus) from both sexes of Fischer 344 rats across four developmental stages (2-, 6-, 21-, and 104-weeks-old)
BioProject: PRJNA238328
Publication: PMID 24510058
Analysis date: Mon Jun 6 17:44:12 2016

Bibliography

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GeneRIFs: Gene References Into Functions

What's a GeneRIF?

Kallistatin Deficiency Induces the Oxidative Stress-Related Epithelial-Mesenchymal Transition of Retinal Pigment Epithelial Cells: A Novel Protagonist in Age-Related Macular Degeneration.
Title: Kallistatin Deficiency Induces the Oxidative Stress-Related Epithelial-Mesenchymal Transition of Retinal Pigment Epithelial Cells: A Novel Protagonist in Age-Related Macular Degeneration.

Submit: New GeneRIF Correction

General gene information

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Gene Ontology Provided by RGD

Component	Evidence Code	Pubs
is_active_in extracellular space	IBA Inferred from Biological aspect of Ancestor more info

General protein information

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Preferred Names: kallistatin

Names: serine (or cysteine) proteinase inhibitor, clade A (alpha-1 antiproteinase, antitrypsin), member 4; serpin peptidase inhibitor, clade A (alpha-1 antiproteinase, antitrypsin), member 4; sserpin family A member 4

NCBI Reference Sequences (RefSeq)

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RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

mRNA and Protein(s)

NM_145097.2 → NP_659565.2 kallistatin precursor

See identical proteins and their annotated locations for NP_659565.2

Status: PROVISIONAL

Source sequence(s)

BC088111

UniProtKB/TrEMBL

F6Q5J8, P97569, Q5M8C3

Related

ENSRNOP00000105480.1, ENSRNOT00000145428.1

Conserved Domains (1) summary

cl00137
Location:52 → 418

SERPIN; SERine Proteinase INhibitors (serpins) exhibit conformational polymorphism shifting from native to cleaved, latent, delta, or polymorphic forms. Many serpins, such as antitrypsin and antichymotrypsin, function as serine protease inhibitors which regulate ...

RefSeqs of Annotated Genomes: GCF_036323735.1-RS_2024_02

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference GRCr8

Genomic

NC_086024.1 Reference GRCr8

Range

128764738..128773858

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GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

XM_008764741.3 → XP_008762963.1 kallistatin isoform X1

See identical proteins and their annotated locations for XP_008762963.1

UniProtKB/TrEMBL

F6Q5J8, P97569, Q5M8C3

Related

ENSRNOP00000013045.3, ENSRNOT00000013045.8

Conserved Domains (1) summary

cl00137
Location:52 → 418

SERPIN; SERine Proteinase INhibitors (serpins) exhibit conformational polymorphism shifting from native to cleaved, latent, delta, or polymorphic forms. Many serpins, such as antitrypsin and antichymotrypsin, function as serine protease inhibitors which regulate ...