U.S. flag

An official website of the United States government

Format

Send to:

Choose Destination

Links from GEO Profiles

    • Showing Current items.

    C4h2orf81 similar to human chromosome 2 open reading frame 81 [ Rattus norvegicus (Norway rat) ]

    Gene ID: 500227, updated on 9-Dec-2024

    Summary

    Official Symbol
    C4h2orf81provided by RGD
    Official Full Name
    similar to human chromosome 2 open reading frame 81provided by RGD
    Primary source
    RGD:1566019
    See related
    AllianceGenome:RGD:1566019
    Gene type
    protein coding
    RefSeq status
    VALIDATED
    Organism
    Rattus norvegicus
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha; Muroidea; Muridae; Murinae; Rattus
    Summary
    Predicted to be located in cytoplasm. Predicted to be part of dynein complex. Orthologous to human C2orf81 (chromosome 2 open reading frame 81). [provided by Alliance of Genome Resources, Dec 2024]
    Expression
    Biased expression in Testes (RPKM 83.7), Lung (RPKM 9.0) and 2 other tissues See more
    Orthologs
    NEW
    Try the new Gene table
    Try the new Transcript table

    Genomic context

    See C4h2orf81 in Genome Data Viewer
    Location:
    4q34
    Exon count:
    5
    Annotation release Status Assembly Chr Location
    RS_2024_02 current GRCr8 (GCF_036323735.1) 4 NC_086022.1 (117219357..117225633)
    RS_2023_06 previous assembly mRatBN7.2 (GCF_015227675.2) 4 NC_051339.1 (115661617..115667929)
    106 previous assembly Rnor_6.0 (GCF_000001895.5) 4 NC_005103.4 (114854449..114860678)

    Chromosome 4 - NC_086022.1Genomic Context describing neighboring genes Neighboring gene uncharacterized LOC108350719 Neighboring gene INO80 complex subunit B Neighboring gene rhotekin Neighboring gene WD repeat domain 54 Neighboring gene dynactin subunit 1 Neighboring gene solute carrier family 4 member 5 Neighboring gene uncharacterized LOC134486596

    Genomic regions, transcripts, and products

    Expression

    • Project title: A rat RNA-Seq transcriptomic BodyMap across 11 organs and 4 developmental stages
    • Description: 320 RNA samples isolated from 11 organs (adrenal gland, brain, heart, kidney, liver, lung, muscle, spleen, thymus, and testes or uterus) from both sexes of Fischer 344 rats across four developmental stages (2-, 6-, 21-, and 104-weeks-old)
    • BioProject: PRJNA238328
    • Publication: PMID 24510058
    • Analysis date: Mon Jun 6 17:44:12 2016

    General protein information

    Preferred Names
    uncharacterized protein C2orf81 homolog
    Names
    hypothetical gene supported by BC079424

    NCBI Reference Sequences (RefSeq)

    NEW Try the new Transcript table

    RefSeqs maintained independently of Annotated Genomes

    These reference sequences exist independently of genome builds. Explain

    These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

    mRNA and Protein(s)

    1. NM_001024330.1NP_001019501.1  uncharacterized protein C2orf81 homolog

      See identical proteins and their annotated locations for NP_001019501.1

      Status: VALIDATED

      Source sequence(s)
      BC079424
      UniProtKB/Swiss-Prot
      Q6AXP4
      UniProtKB/TrEMBL
      A0A8I6AQ46
      Conserved Domains (1) summary
      pfam15479
      Location:6570
      DUF4639; Domain of unknown function (DUF4639)

    RefSeqs of Annotated Genomes: GCF_036323735.1-RS_2024_02

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference GRCr8

    Genomic

    1. NC_086022.1 Reference GRCr8

      Range
      117219357..117225633
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_006236784.4XP_006236846.1  uncharacterized protein C2orf81 homolog isoform X3

      UniProtKB/TrEMBL
      A0A8I6AQ46
      Conserved Domains (1) summary
      pfam15479
      Location:6496
      DUF4639; Domain of unknown function (DUF4639)
    2. XM_039108155.2XP_038964083.1  uncharacterized protein C2orf81 homolog isoform X1

      UniProtKB/TrEMBL
      A0A8I6AQ46
      Conserved Domains (1) summary
      pfam15479
      Location:8571
      DUF4639; Domain of unknown function (DUF4639)
    3. XM_039108156.2XP_038964084.1  uncharacterized protein C2orf81 homolog isoform X2

      UniProtKB/TrEMBL
      A0A8I6AQ46