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    C20h22orf15 similar to human chromosome 22 open reading frame 15 [ Rattus norvegicus (Norway rat) ]

    Gene ID: 499421, updated on 27-Nov-2024

    Summary

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    Official Symbol
    C20h22orf15provided by RGD
    Official Full Name
    similar to human chromosome 22 open reading frame 15provided by RGD
    Primary source
    RGD:1564162
    See related
    EnsemblRapid:ENSRNOG00000028386 AllianceGenome:RGD:1564162
    Gene type
    protein coding
    RefSeq status
    VALIDATED
    Organism
    Rattus norvegicus
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha; Muroidea; Muridae; Murinae; Rattus
    Also known as
    RGD1564162
    Summary
    Orthologous to human C22orf15 (chromosome 22 open reading frame 15). [provided by Alliance of Genome Resources, Nov 2024]
    Expression
    Biased expression in Kidney (RPKM 29.4), Heart (RPKM 28.6) and 9 other tissues See more
    Orthologs
    human mouse all
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    Genomic context

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    See C20h22orf15 in Genome Data Viewer
    Location:
    20p12
    Exon count:
    6
    Annotation release Status Assembly Chr Location
    RS_2024_02 current GRCr8 (GCF_036323735.1) 20 NC_086038.1 (12720651..12725304)
    RS_2023_06 previous assembly mRatBN7.2 (GCF_015227675.2) 20 NC_051355.1 (12723160..12725864)
    106 previous assembly Rnor_6.0 (GCF_000001895.5) 20 NC_005119.4 (13661603..13665073)

    Chromosome 20 - NC_086038.1Genomic Context describing neighboring genes Neighboring gene solute carrier family 5 member 1 like 1 Neighboring gene V-set pre-B cell surrogate light chain 3 Neighboring gene coiled-coil-helix-coiled-coil-helix domain containing 10 Neighboring gene matrix metallopeptidase 11 Neighboring gene SWI/SNF related BAF chromatin remodeling complex subunit B1 Neighboring gene uncharacterized LOC134483889

    Genomic regions, transcripts, and products

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    Go to nucleotide: Graphics FASTA GenBank

    Expression

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    • Project title: A rat RNA-Seq transcriptomic BodyMap across 11 organs and 4 developmental stages
    • Description: 320 RNA samples isolated from 11 organs (adrenal gland, brain, heart, kidney, liver, lung, muscle, spleen, thymus, and testes or uterus) from both sexes of Fischer 344 rats across four developmental stages (2-, 6-, 21-, and 104-weeks-old)
    • BioProject: PRJNA238328
    • Publication: PMID 24510058
    • Analysis date: Mon Jun 6 17:44:12 2016

    Bibliography

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    Related articles in PubMed

    1. Generation and initial analysis of more than 15,000 full-length human and mouse cDNA sequences. Strausberg RL, et al. Proc Natl Acad Sci U S A, 2002 Dec 24. PMID 12477932, Free PMC Article

    GeneRIFs: Gene References Into Functions

    General gene information

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    Markers

    Homology

    General protein information

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    Preferred Names
    uncharacterized protein C22orf15 homolog
    Names
    uncharacterized protein C22orf15
    uncharacterized protein C22orf15-like

    NCBI Reference Sequences (RefSeq)

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    RefSeqs maintained independently of Annotated Genomes

    These reference sequences exist independently of genome builds. Explain

    These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

    mRNA and Protein(s)

    1. NM_001402218.1 → NP_001389147.1  uncharacterized protein C22orf15 homolog precursor

      Status: VALIDATED

      Source sequence(s)
      BC160832
      Related
      ENSRNOP00000036509.7, ENSRNOT00000032257.7

    RefSeqs of Annotated Genomes: GCF_036323735.1-RS_2024_02

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference GRCr8

    Genomic

    1. NC_086038.1 Reference GRCr8

      Range
      12720651..12725304
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_008773826.4 → XP_008772048.1  uncharacterized protein C22orf15 homolog isoform X3

      See identical proteins and their annotated locations for XP_008772048.1

      UniProtKB/TrEMBL
      A0A8I6A9Y0
      Conserved Domains (1) summary
      pfam15874
      Location:11 → 105
      Il2rg; Putative Interleukin 2 receptor, gamma chain

    2. XM_008773827.4 → XP_008772049.1  uncharacterized protein C22orf15 homolog isoform X4

      See identical proteins and their annotated locations for XP_008772049.1

      Conserved Domains (1) summary
      pfam15874
      Location:11 → 105
      Il2rg; Putative Interleukin 2 receptor, gamma chain

    3. XM_039099265.2 → XP_038955193.1  uncharacterized protein C22orf15 homolog isoform X1

      UniProtKB/TrEMBL
      D3ZCL1
      Conserved Domains (1) summary
      pfam15874
      Location:16 → 105
      Il2rg; Putative Interleukin 2 receptor, gamma chain

    4. XM_063279465.1 → XP_063135535.1  uncharacterized protein C22orf15 homolog isoform X5

    5. XM_063279464.1 → XP_063135534.1  uncharacterized protein C22orf15 homolog isoform X2

    Nucleotide Protein Strain
    Heading Accession and Version

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