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    Gm5486 predicted gene 5486 [ Mus musculus (house mouse) ]

    Gene ID: 433024, updated on 17-Aug-2024

    Summary

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    Official Symbol
    Gm5486provided by MGI
    Official Full Name
    predicted gene 5486provided by MGI
    Primary source
    MGI:MGI:3647871
    See related
    AllianceGenome:MGI:3647871
    Gene type
    unknown
    RefSeq status
    MODEL
    Organism
    Mus musculus
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha; Muroidea; Muridae; Murinae; Mus; Mus
    Also known as
    EG433024
    Expression
    Low expression observed in reference dataset See more

    Genomic context

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    See Gm5486 in Genome Data Viewer
    Location:
    16; 16 B5
    Exon count:
    8
    Annotation release Status Assembly Chr Location
    RS_2024_02 current GRCm39 (GCF_000001635.27) 16 NC_000082.7 (49746284..49790621, complement)
    108.20200622 previous assembly GRCm38.p6 (GCF_000001635.26) 16 NC_000082.6 (49925921..49970189, complement)

    Chromosome 16 - NC_000082.7Genomic Context describing neighboring genes Neighboring gene STARR-seq mESC enhancer starr_40971 Neighboring gene CapStarr-seq enhancer MGSCv37_chr16:49818780-49819076 Neighboring gene predicted gene, 16619 Neighboring gene predicted gene 4633 Neighboring gene STARR-seq mESC enhancer starr_40972 Neighboring gene CapStarr-seq enhancer MGSCv37_chr16:49856157-49856266 Neighboring gene CD47 antigen (Rh-related antigen, integrin-associated signal transducer) Neighboring gene STARR-positive B cell enhancer mm9_chr16:49907578-49907878 Neighboring gene STARR-seq mESC enhancer starr_40973 Neighboring gene STARR-positive B cell enhancer ABC_E7456 Neighboring gene STARR-positive B cell enhancer mm9_chr16:49970625-49970926 Neighboring gene STARR-positive B cell enhancer mm9_chr16:49971104-49971405 Neighboring gene predicted gene, 19723 Neighboring gene STARR-positive B cell enhancer mm9_chr16:49982479-49982780 Neighboring gene predicted gene 6936 Neighboring gene STARR-positive B cell enhancer ABC_E5545 Neighboring gene STARR-seq mESC enhancer starr_40976 Neighboring gene predicted gene 4827 Neighboring gene STARR-seq mESC enhancer starr_40978 Neighboring gene predicted gene, 32101

    Genomic regions, transcripts, and products

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    Go to nucleotide: Graphics FASTA GenBank

    Expression

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    • Project title: Mouse ENCODE transcriptome data
    • Description: RNA profiling data sets generated by the Mouse ENCODE project.
    • BioProject: PRJNA66167
    • Publication: PMID 25409824
    • Analysis date: n/a

    Bibliography

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    Related articles in PubMed

    1. Antisense transcription in the mammalian transcriptome. Katayama S, et al. Science, 2005 Sep 2. PMID 16141073
    2. High-efficiency full-length cDNA cloning. Carninci P, et al. Methods Enzymol, 1999. PMID 10349636
    3. RIKEN integrated sequence analysis (RISA) system--384-format sequencing pipeline with 384 multicapillary sequencer. Shibata K, et al. Genome Res, 2000 Nov. PMID 11076861, Free PMC Article
    4. Normalization and subtraction of cap-trapper-selected cDNAs to prepare full-length cDNA libraries for rapid discovery of new genes. Carninci P, et al. Genome Res, 2000 Oct. PMID 11042159, Free PMC Article
    5. Functional annotation of a full-length mouse cDNA collection. Kawai J, et al. Nature, 2001 Feb 8. PMID 11217851

    See all (7) citations in PubMed

    GeneRIFs: Gene References Into Functions

    General gene information

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    Gene Ontology Provided by MGI

    Function Evidence Code Pubs
    enables molecular_function ND
    No biological Data available
    more info
    		  
    Process Evidence Code Pubs
    involved_in biological_process ND
    No biological Data available
    more info
    		  
    Component Evidence Code Pubs
    is_active_in cellular_component ND
    No biological Data available
    more info
    		  

    NCBI Reference Sequences (RefSeq)

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    NEW Try the new Transcript table

    RefSeqs of Annotated Genomes: GCF_000001635.27-RS_2024_02

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference GRCm39 C57BL/6J

    Genomic

    1. NC_000082.7 Reference GRCm39 C57BL/6J

      Range
      49746284..49790621 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    RNA

    1. XR_003951931.2 RNA Sequence

    2. XR_001781910.3 RNA Sequence

    3. XR_003951933.1 RNA Sequence

    4. XR_003951932.1 RNA Sequence

    Suppressed Reference Sequence(s)

    The following Reference Sequences have been suppressed. Explain

    1. NM_001034884.1: Suppressed sequence

      Description
      NM_001034884.1: This RefSeq was permanently suppressed because currently there is support for the transcript but not for the protein.
    Nucleotide Protein Strain
    Heading Accession and Version

    Gene LinkOut

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