U.S. flag

An official website of the United States government

Format

Send to:

Choose Destination

Links from GEO Profiles

    • Showing Current items.

    B230307C23Rik RIKEN cDNA B230307C23 gene [ Mus musculus (house mouse) ]

    Gene ID: 245305, updated on 27-Nov-2024

    Summary

    Go to the top of the page Help
    Official Symbol
    B230307C23Rikprovided by MGI
    Official Full Name
    RIKEN cDNA B230307C23 geneprovided by MGI
    Primary source
    MGI:MGI:3643396
    See related
    Ensembl:ENSMUSG00000080717 AllianceGenome:MGI:3643396
    Gene type
    protein coding
    RefSeq status
    VALIDATED
    Organism
    Mus musculus
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha; Muroidea; Muridae; Murinae; Mus; Mus
    Also known as
    EG245305; 8030444G23Rik
    Summary
    Orthologous to human ZNF788P (zinc finger family member 788, pseudogene). [provided by Alliance of Genome Resources, Nov 2024]
    Expression
    Ubiquitous expression in frontal lobe adult (RPKM 2.1), CNS E11.5 (RPKM 1.9) and 28 other tissues See more
    NEW
    Try the new Gene table
    Try the new Transcript table

    Genomic context

    Go to the top of the page Help
    See B230307C23Rik in Genome Data Viewer
    Location:
    16; 16 C4
    Exon count:
    6
    Annotation release Status Assembly Chr Location
    RS_2024_02 current GRCm39 (GCF_000001635.27) 16 NC_000082.7 (97798278..97817956)
    108.20200622 previous assembly GRCm38.p6 (GCF_000001635.26) 16 NC_000082.6 (97997078..98016756)

    Chromosome 16 - NC_000082.7Genomic Context describing neighboring genes Neighboring gene C2 calcium-dependent domain containing 2 Neighboring gene STARR-seq mESC enhancer starr_41640 Neighboring gene microRNA 6964 Neighboring gene zinc finger and BTB domain containing 21 Neighboring gene predicted gene, 53924 Neighboring gene RIKEN cDNA C030010L15 gene Neighboring gene STARR-positive B cell enhancer ABC_E9939 Neighboring gene vomeronasal 2, receptor, pseudogene 112 Neighboring gene STARR-seq mESC enhancer starr_41643 Neighboring gene RIKEN cDNA A630089N07 gene Neighboring gene STARR-seq mESC enhancer starr_41645 Neighboring gene predicted gene, 53925

    Genomic regions, transcripts, and products

    Go to the top of the page Help

    Go to nucleotide: Graphics FASTA GenBank

    Expression

    Go to the top of the page Help
    • Project title: Mouse ENCODE transcriptome data
    • Description: RNA profiling data sets generated by the Mouse ENCODE project.
    • BioProject: PRJNA66167
    • Publication: PMID 25409824
    • Analysis date: n/a

    Bibliography

    Go to the top of the pageHelp

    Related articles in PubMed

    1. A large-scale, gene-driven mutagenesis approach for the functional analysis of the mouse genome. Hansen J, et al. Proc Natl Acad Sci U S A, 2003 Aug 19. PMID 12904583, Free PMC Article
    2. BayGenomics: a resource of insertional mutations in mouse embryonic stem cells. Stryke D, et al. Nucleic Acids Res, 2003 Jan 1. PMID 12520002, Free PMC Article
    3. Large-scale gene trapping in C57BL/6N mouse embryonic stem cells. Hansen GM, et al. Genome Res, 2008 Oct. PMID 18799693, Free PMC Article
    4. Wnk1 kinase deficiency lowers blood pressure in mice: a gene-trap screen to identify potential targets for therapeutic intervention. Zambrowicz BP, et al. Proc Natl Acad Sci U S A, 2003 Nov 25. PMID 14610273, Free PMC Article
    5. Antisense transcription in the mammalian transcriptome. Katayama S, et al. Science, 2005 Sep 2. PMID 16141073

    See all (12) citations in PubMed

    GeneRIFs: Gene References Into Functions

    General gene information

    Go to the top of the page Help

    Gene Ontology Provided by MGI

    Function Evidence Code Pubs
    enables molecular_function ND
    No biological Data available
    more info
    		  
    Process Evidence Code Pubs
    involved_in biological_process ND
    No biological Data available
    more info
    		  
    Component Evidence Code Pubs
    is_active_in cellular_component ND
    No biological Data available
    more info
    		  

    General protein information

    Go to the top of the page Help
    Preferred Names
    uncharacterized protein LOC245305
    Names
    zinc finger protein 80 pseudogene
    zinc finger protein pseudogene

    NCBI Reference Sequences (RefSeq)

    Go to the top of the page Help

    NEW Try the new Transcript table

    RefSeqs maintained independently of Annotated Genomes

    These reference sequences exist independently of genome builds. Explain

    These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

    mRNA and Protein(s)

    1. NM_001362093.2 → NP_001349022.1  uncharacterized protein LOC245305 isoform 1

      Status: VALIDATED

      Source sequence(s)
      AC163298
      UniProtKB/TrEMBL
      A0AA74KUP2
      Related
      ENSMUSP00000159743.1, ENSMUST00000249385.1
      Conserved Domains (4) summary
      COG5048
      Location:126 → 499
      COG5048; FOG: Zn-finger [General function prediction only]
      sd00017
      Location:410 → 430
      ZF_C2H2; C2H2 Zn finger [structural motif]
      pfam01352
      Location:4 → 44
      KRAB; KRAB box
      pfam13465
      Location:591 → 616
      zf-H2C2_2; Zinc-finger double domain

    2. NM_001362097.2 → NP_001349026.1  uncharacterized protein LOC245305 isoform 2

      Status: VALIDATED

      Source sequence(s)
      AC163298
      Consensus CDS
      CCDS88981.1
      UniProtKB/TrEMBL
      A0A338P767, Q8BLB2
      Related
      ENSMUSP00000156259.2, ENSMUST00000231913.2
      Conserved Domains (1) summary
      pfam01352
      Location:4 → 44
      KRAB; KRAB box

    3. NM_001377008.1 → NP_001363937.1  uncharacterized protein LOC245305 ioform 3

      Status: VALIDATED

      Source sequence(s)
      AC163298
      Conserved Domains (2) summary
      sd00017
      Location:79 → 97
      ZF_C2H2; C2H2 Zn finger [structural motif]
      pfam01352
      Location:4 → 44
      KRAB; KRAB box

    4. NM_001377009.1 → NP_001363938.1  uncharacterized protein LOC245305 isoform 4

      Status: VALIDATED

      Source sequence(s)
      AC163298
      UniProtKB/TrEMBL
      A0A338P6F4
      Related
      ENSMUSP00000155960.2, ENSMUST00000232308.3
      Conserved Domains (1) summary
      pfam01352
      Location:4 → 44
      KRAB; KRAB box

    RefSeqs of Annotated Genomes: GCF_000001635.27-RS_2024_02

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference GRCm39 C57BL/6J

    Genomic

    1. NC_000082.7 Reference GRCm39 C57BL/6J

      Range
      97798278..97817956
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_030249113.1 → XP_030104973.1  uncharacterized protein LOC245305 isoform X4

      UniProtKB/TrEMBL
      A0A338P767, Q8BLB2
      Related
      ENSMUSP00000156366.2, ENSMUST00000232387.2
      Conserved Domains (1) summary
      pfam01352
      Location:4 → 44
      KRAB; KRAB box

    2. XM_036159929.1 → XP_036015822.1  uncharacterized protein LOC245305 isoform X3

      Conserved Domains (1) summary
      pfam01352
      Location:3 → 44
      KRAB; KRAB box

    3. XM_030249112.2 → XP_030104972.1  uncharacterized protein LOC245305 isoform X1

      Conserved Domains (4) summary
      COG5048
      Location:126 → 499
      COG5048; FOG: Zn-finger [General function prediction only]
      sd00017
      Location:410 → 430
      ZF_C2H2; C2H2 Zn finger [structural motif]
      pfam01352
      Location:4 → 44
      KRAB; KRAB box
      pfam13465
      Location:535 → 559
      zf-H2C2_2; Zinc-finger double domain

    4. XM_036159928.1 → XP_036015821.1  uncharacterized protein LOC245305 isoform X2

      Conserved Domains (2) summary
      sd00017
      Location:79 → 97
      ZF_C2H2; C2H2 Zn finger [structural motif]
      pfam01352
      Location:3 → 44
      KRAB; KRAB box

    Suppressed Reference Sequence(s)

    The following Reference Sequences have been suppressed. Explain

    1. NG_030633.1: Suppressed sequence

      Description
      NG_030633.1: This RefSeq was removed because it is now thought that this gene does encode a protein.
    Nucleotide Protein Strain
    Heading Accession and Version

    Gene LinkOut

    The following LinkOut resources are supplied by external providers. These providers are responsible for maintaining the links.