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    LNCRNA-IUR lncRNA imatinib upregulated [ Homo sapiens (human) ]

    Gene ID: 101929295, updated on 10-Dec-2024

    Summary

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    Official Symbol
    LNCRNA-IURprovided by HGNC
    Official Full Name
    lncRNA imatinib upregulatedprovided by HGNC
    Primary source
    HGNC:HGNC:55755
    See related
    Ensembl:ENSG00000245552 AllianceGenome:HGNC:55755
    Gene type
    ncRNA
    RefSeq status
    VALIDATED
    Organism
    Homo sapiens
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini; Catarrhini; Hominidae; Homo
    Expression
    Low expression observed in reference dataset See more
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    Genomic context

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    See LNCRNA-IUR in Genome Data Viewer
    Location:
    11q21
    Exon count:
    3
    Annotation release Status Assembly Chr Location
    RS_2024_08 current GRCh38.p14 (GCF_000001405.40) 11 NC_000011.10 (95150539..95159148)
    RS_2024_08 current T2T-CHM13v2.0 (GCF_009914755.1) 11 NC_060935.1 (95157658..95166271)
    RS_2024_09 previous assembly GRCh37.p13 (GCF_000001405.25) 11 NC_000011.9 (94883703..94892312)

    Chromosome 11 - NC_000011.10Genomic Context describing neighboring genes Neighboring gene ATAC-STARR-seq lymphoblastoid silent region 3846 Neighboring gene Sharpr-MPRA regulatory region 7470 Neighboring gene ATAC-STARR-seq lymphoblastoid active region 5414 Neighboring gene CDK7 strongly-dependent group 2 enhancer GRCh37_chr11:94841280-94842479 Neighboring gene endonuclease domain containing 1 Neighboring gene CRISPRi-validated cis-regulatory element chr11.4868 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr11:94883489-94884030 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr11:94884031-94884572 Neighboring gene ATAC-STARR-seq lymphoblastoid silent region 3847 Neighboring gene BUD13 homolog pseudogene 1 Neighboring gene sestrin 3 Neighboring gene uncharacterized LOC100129203 Neighboring gene ATAC-STARR-seq lymphoblastoid silent region 3848 Neighboring gene ATAC-STARR-seq lymphoblastoid silent region 3849 Neighboring gene NANOG-H3K27ac-H3K4me1 hESC enhancer GRCh37_chr11:94964745-94965384 Neighboring gene H3K27ac-H3K4me1 hESC enhancer GRCh37_chr11:94965385-94966024 Neighboring gene H3K27ac hESC enhancer GRCh37_chr11:94981794-94982294 Neighboring gene ATAC-STARR-seq lymphoblastoid active region 5416 Neighboring gene Sharpr-MPRA regulatory region 282 Neighboring gene VISTA enhancer hs2531 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr11:95074595-95075094 Neighboring gene BRD4-independent group 4 enhancer GRCh37_chr11:95092304-95093503 Neighboring gene ATAC-STARR-seq lymphoblastoid silent region 3850 Neighboring gene H3K27ac-H3K4me1 hESC enhancer GRCh37_chr11:95180437-95180967 Neighboring gene uncharacterized LOC105369439 Neighboring gene MPRA-validated peak1408 silencer Neighboring gene NANOG hESC enhancer GRCh37_chr11:95209557-95210058

    Genomic regions, transcripts, and products

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    Go to nucleotide: Graphics FASTA GenBank

    Expression

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    • Project title: Tissue-specific circular RNA induction during human fetal development
    • Description: 35 human fetal samples from 6 tissues (3 - 7 replicates per tissue) collected between 10 and 20 weeks gestational time were sequenced using Illumina TruSeq Stranded Total RNA
    • BioProject: PRJNA270632
    • Publication: PMID 26076956
    • Analysis date: Mon Apr 2 22:54:59 2018

    Bibliography

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    Related articles in PubMed

    1. Novel lncRNA-IUR suppresses Bcr-Abl-induced tumorigenesis through regulation of STAT5-CD71 pathway. Wang X, et al. Mol Cancer, 2019 Apr 8. PMID 30961617, Free PMC Article
    2. Complete sequencing and characterization of 21,243 full-length human cDNAs. Ota T, et al. Nat Genet, 2004 Jan. PMID 14702039

    GeneRIFs: Gene References Into Functions

    Phenotypes

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    Review eQTL and phenotype association data in this region using PheGenI

    Variation

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    See variants in ClinVar

    See studies and variants in dbVar

    See Variation Viewer (GRCh37.p13)

    See Variation Viewer (GRCh38)

    General gene information

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    NCBI Reference Sequences (RefSeq)

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    RefSeqs maintained independently of Annotated Genomes

    These reference sequences exist independently of genome builds. Explain

    These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

    RNA

    1. NR_110303.1 RNA Sequence

      Status: VALIDATED

      Source sequence(s)
      AP000787
      Related
      ENST00000501356.5

    RefSeqs of Annotated Genomes: GCF_000001405.40-RS_2024_08

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference GRCh38.p14 Primary Assembly

    Genomic

    1. NC_000011.10 Reference GRCh38.p14 Primary Assembly

      Range
      95150539..95159148
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    Alternate T2T-CHM13v2.0

    Genomic

    1. NC_060935.1 Alternate T2T-CHM13v2.0

      Range
      95157658..95166271
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)
    Nucleotide Protein
    Heading Accession and Version

    Gene LinkOut

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