Kansl3 KAT8 regulatory NSL complex subunit 3 [Rattus norvegicus (Norway rat)] - Gene

Summary

Official Symbol: Kansl3provided by RGD
Official Full Name: KAT8 regulatory NSL complex subunit 3provided by RGD
Primary source: RGD:1309220
See related: EnsemblRapid:ENSRNOG00000015417 AllianceGenome:RGD:1309220
Gene type: protein coding
RefSeq status: PROVISIONAL
Organism: Rattus norvegicus
Lineage: Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha; Muroidea; Muridae; Murinae; Rattus
Also known as: RGD1309220
Summary: Predicted to be involved in positive regulation of transcription by RNA polymerase II and regulation of mitochondrial transcription. Predicted to be located in mitochondrion and nucleoplasm. Predicted to be part of NSL complex. Orthologous to human KANSL3 (KAT8 regulatory NSL complex subunit 3). [provided by Alliance of Genome Resources, Dec 2024]
Expression: Biased expression in Heart (RPKM 155.5), Testes (RPKM 130.7) and 9 other tissues See more
Orthologs: human mouse all
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Genomic context

Location:: 9q21

Exon count:: 23

Annotation release	Status	Assembly	Chr	Location
RS_2024_02	current	GRCr8 (GCF_036323735.1)	9	NC_086027.1 (46058070..46101643, complement)
RS_2023_06	previous assembly	mRatBN7.2 (GCF_015227675.2)	9	NC_051344.1 (38562170..38605757, complement)
106	previous assembly	Rnor_6.0 (GCF_000001895.5)	9	NC_005108.4 (42899432..42943224, complement)

Chromosome 9 - NC_086027.1 Genomic Context describing neighboring genes

Genomic regions, transcripts, and products

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Genomic Sequence:

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Expression

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See details

Project title: A rat RNA-Seq transcriptomic BodyMap across 11 organs and 4 developmental stages
Description: 320 RNA samples isolated from 11 organs (adrenal gland, brain, heart, kidney, liver, lung, muscle, spleen, thymus, and testes or uterus) from both sexes of Fischer 344 rats across four developmental stages (2-, 6-, 21-, and 104-weeks-old)
BioProject: PRJNA238328
Publication: PMID 24510058
Analysis date: Mon Jun 6 17:44:12 2016

Bibliography

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GeneRIFs: Gene References Into Functions

What's a GeneRIF?

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General gene information

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Markers

D9Got44 (e-PCR)
- UniSTS:113980

RH132858 (e-PCR)
- UniSTS:216141

RH143602 (e-PCR)
- UniSTS:232848

BF413022 (e-PCR)
- UniSTS:248487

Gene Ontology Provided by RGD

Process	Evidence Code	Pubs
involved_in chromatin organization	IEA Inferred from Electronic Annotation more info
involved_in positive regulation of transcription by RNA polymerase II	IBA Inferred from Biological aspect of Ancestor more info
involved_in regulation of mitochondrial transcription	IEA Inferred from Electronic Annotation more info
involved_in regulation of mitochondrial transcription	ISO Inferred from Sequence Orthology more info
involved_in regulation of mitochondrial transcription	ISS Inferred from Sequence or Structural Similarity more info

Component	Evidence Code	Pubs
part_of NSL complex	IBA Inferred from Biological aspect of Ancestor more info
part_of NSL complex	IEA Inferred from Electronic Annotation more info
part_of NSL complex	ISO Inferred from Sequence Orthology more info
part_of NSL complex	ISS Inferred from Sequence or Structural Similarity more info
part_of histone acetyltransferase complex	ISO Inferred from Sequence Orthology more info
part_of histone acetyltransferase complex	ISS Inferred from Sequence or Structural Similarity more info
located_in intracellular membrane-bounded organelle	ISO Inferred from Sequence Orthology more info
located_in mitochondrion	IEA Inferred from Electronic Annotation more info
located_in mitochondrion	ISO Inferred from Sequence Orthology more info
located_in mitochondrion	ISS Inferred from Sequence or Structural Similarity more info
located_in nucleoplasm	IEA Inferred from Electronic Annotation more info
located_in nucleoplasm	ISO Inferred from Sequence Orthology more info
located_in nucleus	IEA Inferred from Electronic Annotation more info

General protein information

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Preferred Names: KAT8 regulatory NSL complex subunit 3

Names: NSL complex protein NSL3; non-specific lethal 3 homolog

NCBI Reference Sequences (RefSeq)

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RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.