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    [ Saccharomyces cerevisiae S288C ]

    Gene ID: 850365, updated on 9-Dec-2024

    Summary

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    Primary source
    SGD:S000006668
    Locus tag
    YNCC0005W
    See related
    AllianceGenome:SGD:S000006668
    Gene type
    tRNA
    Organism
    Saccharomyces cerevisiae S288C (strain: S288C)
    Lineage
    Eukaryota; Fungi; Dikarya; Ascomycota; Saccharomycotina; Saccharomycetes; Saccharomycetales; Saccharomycetaceae; Saccharomyces
    Summary
    Predicted to enable triplet codon-amino acid adaptor activity. Predicted to be involved in translational elongation. Predicted to be located in cytosol. [provided by Alliance of Genome Resources, Dec 2024]
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    Genomic context

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    Location:
    chromosome: III
    Sequence:
    Chromosome: III; NC_001135.5 (127716..127789)

    Chromosome III - NC_001135.5Genomic Context describing neighboring genes Neighboring gene tRNA-Pro Neighboring gene DUP240 family protein Neighboring gene serine/threonine protein kinase SAT4 Neighboring gene amphiphysin-like protein RVS161

    Genomic regions, transcripts, and products

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    Genomic Sequence:
    NC_001135.5

    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. Unexpected expansion of tRNA substrate recognition by the yeast m1G9 methyltransferase Trm10. Swinehart WE, et al. RNA, 2013 Aug. PMID 23793893, Free PMC Article
    2. Requirement of Nhp6 proteins for transcription of a subset of tRNA genes and heterochromatin barrier function in Saccharomyces cerevisiae. Braglia P, et al. Mol Cell Biol, 2007 Mar. PMID 17178828, Free PMC Article
    3. A minimal promoter for TFIIIC-dependent in vitro transcription of snoRNA and tRNA genes by RNA polymerase III. Guffanti E, et al. J Biol Chem, 2006 Aug 18. PMID 16787917
    4. tRNA genes and retroelements in the yeast genome. Hani J, et al. Nucleic Acids Res, 1998 Feb 1. PMID 9443958, Free PMC Article
    5. Transfer RNA gene redundancy and translational selection in Saccharomyces cerevisiae. Percudani R, et al. J Mol Biol, 1997 May 2. PMID 9159473

    See all (9) citations in PubMed

    GeneRIFs: Gene References Into Functions

    Interactions

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    Products Interactant Other Gene Complex Source Pubs Description

    General gene information

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    • Asparagine tRNA (tRNA-Asn), predicted by tRNAscan-SE analysis

    Gene Ontology Provided by SGD

    Function Evidence Code Pubs
    enables triplet codon-amino acid adaptor activity IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    enables triplet codon-amino acid adaptor activity ISM
    Inferred from Sequence Model
    more info
    		 PubMed 
    Process Evidence Code Pubs
    involved_in translation IEA
    Inferred from Electronic Annotation
    more info
    		  
    involved_in translational elongation IC
    Inferred by Curator
    more info
    		 PubMed 
    Component Evidence Code Pubs
    located_in cytosol IC
    Inferred by Curator
    more info
    		 PubMed 

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