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    Gm5460 predicted gene 5460 [ Mus musculus (house mouse) ]

    Gene ID: 432838, updated on 27-Nov-2024

    Summary

    Official Symbol
    Gm5460provided by MGI
    Official Full Name
    predicted gene 5460provided by MGI
    Primary source
    MGI:MGI:3643519
    See related
    Ensembl:ENSMUSG00000072624 AllianceGenome:MGI:3643519
    Gene type
    protein coding
    RefSeq status
    VALIDATED
    Organism
    Mus musculus
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha; Muroidea; Muridae; Murinae; Mus; Mus
    Also known as
    EG432838
    Expression
    Restricted expression toward testis adult (RPKM 10.4) See more
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    Genomic context

    See Gm5460 in Genome Data Viewer
    Location:
    14 B; 14 20.8 cM
    Exon count:
    17
    Annotation release Status Assembly Chr Location
    RS_2024_02 current GRCm39 (GCF_000001635.27) 14 NC_000080.7 (33738252..33769071)
    108.20200622 previous assembly GRCm38.p6 (GCF_000001635.26) 14 NC_000080.6 (34016295..34047114)

    Chromosome 14 - NC_000080.7Genomic Context describing neighboring genes Neighboring gene retinol binding protein 3, interstitial Neighboring gene zinc finger protein 488 Neighboring gene predicted gene, 30083 Neighboring gene STARR-seq mESC enhancer starr_36360 Neighboring gene RIKEN cDNA A630023A22 gene Neighboring gene anthrax toxin receptor-like Neighboring gene STARR-seq mESC enhancer starr_36361 Neighboring gene annexin A8

    Genomic regions, transcripts, and products

    Expression

    • Project title: Mouse ENCODE transcriptome data
    • Description: RNA profiling data sets generated by the Mouse ENCODE project.
    • BioProject: PRJNA66167
    • Publication: PMID 25409824
    • Analysis date: n/a

    General protein information

    Preferred Names
    uncharacterized protein LOC432838

    NCBI Reference Sequences (RefSeq)

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    RefSeqs maintained independently of Annotated Genomes

    These reference sequences exist independently of genome builds. Explain

    These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

    mRNA and Protein(s)

    1. NM_001034880.3NP_001030052.2  uncharacterized protein LOC432838 isoform 1 precursor

      Status: VALIDATED

      Source sequence(s)
      AC164099
      Consensus CDS
      CCDS49442.1
    2. NM_001416975.1NP_001403904.1  uncharacterized protein LOC432838 isoform 2

      Status: VALIDATED

      Source sequence(s)
      AC164099

    RefSeqs of Annotated Genomes: GCF_000001635.27-RS_2024_02

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference GRCm39 C57BL/6J

    Genomic

    1. NC_000080.7 Reference GRCm39 C57BL/6J

      Range
      33738252..33769071
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_006519209.4XP_006519272.1  uncharacterized protein LOC432838 isoform X2

      UniProtKB/TrEMBL
      A0A2I3BRZ9
      Related
      ENSMUSP00000154683.2, ENSMUST00000227383.2
      Conserved Domains (2) summary
      pfam05587
      Location:174271
      Anth_Ig; Anthrax receptor extracellular domain
      cl00057
      Location:14179
      vWFA; Von Willebrand factor type A (vWA) domain was originally found in the blood coagulation protein von Willebrand factor (vWF). Typically, the vWA domain is made up of approximately 200 amino acid residues folded into a classic a/b para-rossmann type of ...
    2. XM_006519211.1XP_006519274.1  uncharacterized protein LOC432838 isoform X4

      Conserved Domains (2) summary
      pfam05587
      Location:63160
      Anth_Ig; Anthrax receptor extracellular domain
      cl00057
      Location:568
      vWFA; Von Willebrand factor type A (vWA) domain was originally found in the blood coagulation protein von Willebrand factor (vWF). Typically, the vWA domain is made up of approximately 200 amino acid residues folded into a classic a/b para-rossmann type of ...