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    Terb2 telomere repeat binding bouquet formation protein 2 [ Mus musculus (house mouse) ]

    Gene ID: 74401, updated on 27-Nov-2024

    Summary

    Official Symbol
    Terb2provided by MGI
    Official Full Name
    telomere repeat binding bouquet formation protein 2provided by MGI
    Primary source
    MGI:MGI:1921651
    See related
    Ensembl:ENSMUSG00000027229 AllianceGenome:MGI:1921651
    Gene type
    protein coding
    RefSeq status
    VALIDATED
    Organism
    Mus musculus
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha; Muroidea; Muridae; Murinae; Mus; Mus
    Also known as
    4933406J08Rik
    Summary
    Involved in homologous chromosome pairing at meiosis and meiotic attachment of telomere to nuclear envelope. Acts upstream of or within meiosis I; oogenesis; and spermatogenesis. Located in chromosome, telomeric region and nuclear inner membrane. Human ortholog(s) of this gene implicated in spermatogenic failure 59. Orthologous to human TERB2 (telomere repeat binding bouquet formation protein 2). [provided by Alliance of Genome Resources, Nov 2024]
    Expression
    Low expression observed in reference dataset See more
    Orthologs
    NEW
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    Genomic context

    See Terb2 in Genome Data Viewer
    Location:
    2 E5; 2 60.56 cM
    Exon count:
    7
    Annotation release Status Assembly Chr Location
    RS_2024_02 current GRCm39 (GCF_000001635.27) 2 NC_000068.8 (122016753..122036874)
    108.20200622 previous assembly GRCm38.p6 (GCF_000001635.26) 2 NC_000068.7 (122186272..122206393)

    Chromosome 2 - NC_000068.8Genomic Context describing neighboring genes Neighboring gene protein associated with topoisomerase II homolog 2 (yeast) Neighboring gene STARR-positive B cell enhancer ABC_E512 Neighboring gene STARR-seq mESC enhancer starr_05550 Neighboring gene beta-2 microglobulin Neighboring gene tripartite motif-containing 69 Neighboring gene ATP synthase F(0) complex subunit C1, mitochondrial pseudogene Neighboring gene predicted gene 14058

    Genomic regions, transcripts, and products

    Expression

    • Project title: Mouse ENCODE transcriptome data
    • Description: RNA profiling data sets generated by the Mouse ENCODE project.
    • BioProject: PRJNA66167
    • Publication: PMID 25409824
    • Analysis date: n/a

    Bibliography

    Variation

    Alleles

    Alleles of this type are documented at Mouse Genome Informatics  (MGI)

    General gene information

    Markers

    Gene Ontology Provided by MGI

    Function Evidence Code Pubs
    enables protein binding IPI
    Inferred from Physical Interaction
    more info
    PubMed 
    Process Evidence Code Pubs
    acts_upstream_of_or_within double-strand break repair involved in meiotic recombination IGI
    Inferred from Genetic Interaction
    more info
    PubMed 
    acts_upstream_of_or_within double-strand break repair involved in meiotic recombination IMP
    Inferred from Mutant Phenotype
    more info
    PubMed 
    involved_in homologous chromosome pairing at meiosis IBA
    Inferred from Biological aspect of Ancestor
    more info
     
    acts_upstream_of_or_within homologous chromosome pairing at meiosis IGI
    Inferred from Genetic Interaction
    more info
    PubMed 
    acts_upstream_of_or_within homologous chromosome pairing at meiosis IMP
    Inferred from Mutant Phenotype
    more info
    PubMed 
    involved_in homologous chromosome pairing at meiosis IMP
    Inferred from Mutant Phenotype
    more info
    PubMed 
    involved_in meiotic attachment of telomere to nuclear envelope IBA
    Inferred from Biological aspect of Ancestor
    more info
     
    acts_upstream_of_or_within meiotic attachment of telomere to nuclear envelope IGI
    Inferred from Genetic Interaction
    more info
    PubMed 
    acts_upstream_of_or_within meiotic attachment of telomere to nuclear envelope IMP
    Inferred from Mutant Phenotype
    more info
    PubMed 
    involved_in meiotic attachment of telomere to nuclear envelope IMP
    Inferred from Mutant Phenotype
    more info
    PubMed 
    involved_in meiotic telomere clustering IMP
    Inferred from Mutant Phenotype
    more info
    PubMed 
    acts_upstream_of_or_within oogenesis IMP
    Inferred from Mutant Phenotype
    more info
    PubMed 
    acts_upstream_of_or_within spermatogenesis IMP
    Inferred from Mutant Phenotype
    more info
    PubMed 
    acts_upstream_of_or_within synaptonemal complex assembly IMP
    Inferred from Mutant Phenotype
    more info
    PubMed 
    Component Evidence Code Pubs
    located_in chromosome, telomeric region IDA
    Inferred from Direct Assay
    more info
    PubMed 
    located_in nuclear envelope IDA
    Inferred from Direct Assay
    more info
    PubMed 
    is_active_in nuclear inner membrane IBA
    Inferred from Biological aspect of Ancestor
    more info
     
    located_in nuclear inner membrane IDA
    Inferred from Direct Assay
    more info
    PubMed 

    General protein information

    Preferred Names
    telomere repeats-binding bouquet formation protein 2

    NCBI Reference Sequences (RefSeq)

    NEW Try the new Transcript table

    RefSeqs maintained independently of Annotated Genomes

    These reference sequences exist independently of genome builds. Explain

    These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

    mRNA and Protein(s)

    1. NM_028914.1NP_083190.1  telomere repeats-binding bouquet formation protein 2

      See identical proteins and their annotated locations for NP_083190.1

      Status: VALIDATED

      Source sequence(s)
      AK016695, AL844573
      Consensus CDS
      CCDS50688.1
      UniProtKB/Swiss-Prot
      Q9D494
      UniProtKB/TrEMBL
      A0A0P0YTB2
      Related
      ENSMUSP00000028661.6, ENSMUST00000028661.6
      Conserved Domains (1) summary
      pfam15101
      Location:2202
      DUF4557; Domain of unknown function (DUF4557)

    RefSeqs of Annotated Genomes: GCF_000001635.27-RS_2024_02

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference GRCm39 C57BL/6J

    Genomic

    1. NC_000068.8 Reference GRCm39 C57BL/6J

      Range
      122016753..122036874
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)