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    Tmem82 transmembrane protein 82 [ Mus musculus (house mouse) ]

    Gene ID: 213989, updated on 27-Nov-2024

    Summary

    Official Symbol
    Tmem82provided by MGI
    Official Full Name
    transmembrane protein 82provided by MGI
    Primary source
    MGI:MGI:2384869
    See related
    Ensembl:ENSMUSG00000043085 AllianceGenome:MGI:2384869
    Gene type
    protein coding
    RefSeq status
    VALIDATED
    Organism
    Mus musculus
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha; Muroidea; Muridae; Murinae; Mus; Mus
    Summary
    Predicted to be located in membrane. Orthologous to human TMEM82 (transmembrane protein 82). [provided by Alliance of Genome Resources, Nov 2024]
    Expression
    Biased expression in testis adult (RPKM 52.6), duodenum adult (RPKM 37.9) and 9 other tissues See more
    Orthologs
    NEW
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    Genomic context

    See Tmem82 in Genome Data Viewer
    Location:
    4 D3; 4 74.64 cM
    Exon count:
    6
    Annotation release Status Assembly Chr Location
    RS_2024_02 current GRCm39 (GCF_000001635.27) 4 NC_000070.7 (141341544..141345944, complement)
    108.20200622 previous assembly GRCm38.p6 (GCF_000001635.26) 4 NC_000070.6 (141614233..141618633, complement)

    Chromosome 4 - NC_000070.7Genomic Context describing neighboring genes Neighboring gene RIKEN cDNA B330016D10 gene Neighboring gene STARR-positive B cell enhancer ABC_E6251 Neighboring gene STARR-positive B cell enhancer ABC_E6252 Neighboring gene STARR-seq mESC enhancer starr_11919 Neighboring gene STARR-seq mESC enhancer starr_11920 Neighboring gene STARR-seq mESC enhancer starr_11921 Neighboring gene STARR-positive B cell enhancer ABC_E1289 Neighboring gene filamin binding LIM protein 1 Neighboring gene STARR-positive B cell enhancer ABC_E1662 Neighboring gene STARR-seq mESC enhancer starr_11923 Neighboring gene expressed sequence AI507597 Neighboring gene STARR-positive B cell enhancer mm9_chr4:141180986-141181286 Neighboring gene solute carrier family 25, member 34 Neighboring gene pleckstrin homology domain containing, family M (with RUN domain) member 2 Neighboring gene predicted gene, 54266

    Genomic regions, transcripts, and products

    Expression

    • Project title: Mouse ENCODE transcriptome data
    • Description: RNA profiling data sets generated by the Mouse ENCODE project.
    • BioProject: PRJNA66167
    • Publication: PMID 25409824
    • Analysis date: n/a

    Variation

    Alleles

    Alleles of this type are documented at Mouse Genome Informatics  (MGI)
    • Endonuclease-mediated (3) 

    General gene information

    Markers

    Clone Names

    • MGC37938

    Gene Ontology Provided by MGI

    Function Evidence Code Pubs
    enables molecular_function ND
    No biological Data available
    more info
     
    Process Evidence Code Pubs
    involved_in biological_process ND
    No biological Data available
    more info
     
    Component Evidence Code Pubs
    is_active_in cellular_component ND
    No biological Data available
    more info
     
    located_in membrane IEA
    Inferred from Electronic Annotation
    more info
     

    NCBI Reference Sequences (RefSeq)

    NEW Try the new Transcript table

    RefSeqs maintained independently of Annotated Genomes

    These reference sequences exist independently of genome builds. Explain

    These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

    mRNA and Protein(s)

    1. NM_145987.2NP_666099.2  transmembrane protein 82

      See identical proteins and their annotated locations for NP_666099.2

      Status: VALIDATED

      Source sequence(s)
      AK085940, AK162322, BU961312
      Consensus CDS
      CCDS18877.1
      UniProtKB/Swiss-Prot
      A2ADF5, Q8R115
      Related
      ENSMUSP00000058412.9, ENSMUST00000053263.9
      Conserved Domains (1) summary
      pfam15816
      Location:18313
      TMEM82; Transmembrane protein 82

    RNA

    1. NR_151462.1 RNA Sequence

      Status: VALIDATED

      Source sequence(s)
      AK085940, AL670446, BB798487, BY720765

    RefSeqs of Annotated Genomes: GCF_000001635.27-RS_2024_02

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference GRCm39 C57BL/6J

    Genomic

    1. NC_000070.7 Reference GRCm39 C57BL/6J

      Range
      141341544..141345944 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)