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    TDRD7 tudor domain containing 7 [ Sus scrofa (pig) ]

    Gene ID: 100152652, updated on 3-Dec-2024

    Summary

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    Gene symbol
    TDRD7
    Gene description
    tudor domain containing 7
    See related
    Ensembl:ENSSSCG00000053078
    Gene type
    protein coding
    RefSeq status
    MODEL
    Organism
    Sus scrofa
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Laurasiatheria; Artiodactyla; Suina; Suidae; Sus
    Expression
    Ubiquitous expression in lung (RPKM 15.9), ovary (RPKM 13.1) and 8 other tissues See more
    Orthologs
    human mouse all
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    Genomic context

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    See TDRD7 in Genome Data Viewer
    Location:
    chromosome: 1
    Exon count:
    18
    Annotation release Status Assembly Chr Location
    106 current Sscrofa11.1 (GCF_000003025.6) 1 NC_010443.5 (239285628..239368558)
    105 previous assembly Sscrofa10.2 (GCF_000003025.5) 1 NC_010443.4 (267342175..267425075)

    Chromosome 1 - NC_010443.5Genomic Context describing neighboring genes Neighboring gene stimulated by retinoic acid gene 6 protein-like Neighboring gene protein FAM92A1-like Neighboring gene coiled-coil domain containing 180 Neighboring gene tropomodulin 1 Neighboring gene thiosulfate sulfurtransferase like domain containing 2 Neighboring gene nuclear cap binding protein subunit 1 Neighboring gene XPA, DNA damage recognition and repair factor

    Genomic regions, transcripts, and products

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    Go to nucleotide: Graphics FASTA GenBank

    Expression

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    • Project title: Transcriptome data used for gene annotation
    • Description: Nine kinds of tissues and a mixture of multiple tissues were sequenced for genome annotation
    • BioProject: PRJNA311523
    • Publication: PMID 27646534
    • Analysis date: Thu Dec 14 17:10:49 2017

    Bibliography

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    Related articles in PubMed

    1. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

    GeneRIFs: Gene References Into Functions

    General gene information

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    Homology

    Gene Ontology Provided by RefSeq

    Process Evidence Code Pubs
    involved_in lens fiber cell differentiation IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    involved_in lens morphogenesis in camera-type eye IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    involved_in spermatogenesis IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 

    General protein information

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    Preferred Names
    tudor domain-containing protein 7

    NCBI Reference Sequences (RefSeq)

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    RefSeqs of Annotated Genomes: Sus scrofa Annotation Release 106 details...Open this link in a new tab

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference Sscrofa11.1 Primary Assembly

    Genomic

    1. NC_010443.5 Reference Sscrofa11.1 Primary Assembly

      Range
      239285628..239368558
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_001924680.5 → XP_001924715.1  tudor domain-containing protein 7 isoform X2

      See identical proteins and their annotated locations for XP_001924715.1

      UniProtKB/TrEMBL
      A0A0B8RT29, A0A480HIF7, A0A4X1UNT1, A0A8D1KED1, A0A8D1RME7
      Related
      ENSSSCP00000076981.1, ENSSSCT00000101952.1
      Conserved Domains (5) summary
      cd04508
      Location:707 → 752
      TUDOR; Tudor domains are found in many eukaryotic organisms and have been implicated in protein-protein interactions in which methylated protein substrates bind to these domains. For example, the Tudor domain of Survival of Motor Neuron (SMN) binds to ...
      cd09973
      Location:234 → 300
      LOTUS_2_TDRD7; The second LOTUS domain on Tudor-containing protein 7 (TDRD7)
      cd09974
      Location:339 → 404
      LOTUS_3_TDRD7; The third LOTUS domain on Tudor-containing protein 7 (TDRD7)
      cd09986
      Location:5 → 91
      LOTUS_1_TDRD7; The first LOTUS domain on Tudor-containing protein 7 (TDRD7)
      pfam00567
      Location:909 → 1026
      TUDOR; Tudor domain

    2. XM_013993678.2 → XP_013849132.1  tudor domain-containing protein 7 isoform X3

      UniProtKB/TrEMBL
      A0A8D0WP67
      Conserved Domains (5) summary
      cd04508
      Location:443 → 485
      TUDOR; Tudor domains are found in many eukaryotic organisms and have been implicated in protein-protein interactions in which methylated protein substrates bind to these domains. For example, the Tudor domain of Survival of Motor Neuron (SMN) binds to ...
      cd09973
      Location:160 → 226
      LOTUS_2_TDRD7; The second LOTUS domain on Tudor-containing protein 7 (TDRD7)
      cd09974
      Location:265 → 330
      LOTUS_3_TDRD7; The third LOTUS domain on Tudor-containing protein 7 (TDRD7)
      pfam00567
      Location:855 → 972
      TUDOR; Tudor domain
      cl14879
      Location:1 → 17
      LabA_like_C; C-terminal domain of LabA_like proteins

    3. XM_021066290.1 → XP_020921949.1  tudor domain-containing protein 7 isoform X4

      UniProtKB/TrEMBL
      A0A4X1UKJ2, A0A4X1UNT1
      Conserved Domains (4) summary
      cd09973
      Location:160 → 226
      LOTUS_2_TDRD7; The second LOTUS domain on Tudor-containing protein 7 (TDRD7)
      cd09974
      Location:265 → 330
      LOTUS_3_TDRD7; The third LOTUS domain on Tudor-containing protein 7 (TDRD7)
      pfam00567
      Location:835 → 952
      TUDOR; Tudor domain
      cl14879
      Location:1 → 17
      LabA_like_C; C-terminal domain of LabA_like proteins

    4. XM_013993677.2 → XP_013849131.1  tudor domain-containing protein 7 isoform X1

      UniProtKB/TrEMBL
      A0A8D0WP67
      Conserved Domains (5) summary
      cd04508
      Location:517 → 559
      TUDOR; Tudor domains are found in many eukaryotic organisms and have been implicated in protein-protein interactions in which methylated protein substrates bind to these domains. For example, the Tudor domain of Survival of Motor Neuron (SMN) binds to ...
      cd09973
      Location:234 → 300
      LOTUS_2_TDRD7; The second LOTUS domain on Tudor-containing protein 7 (TDRD7)
      cd09974
      Location:339 → 404
      LOTUS_3_TDRD7; The third LOTUS domain on Tudor-containing protein 7 (TDRD7)
      cd09986
      Location:5 → 91
      LOTUS_1_TDRD7; The first LOTUS domain on Tudor-containing protein 7 (TDRD7)
      pfam00567
      Location:929 → 1046
      TUDOR; Tudor domain
    Nucleotide Protein Strain
    Heading Accession and Version

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