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    DCAF10 DDB1 and CUL4 associated factor 10 [ Sus scrofa (pig) ]

    Gene ID: 100157661, updated on 17-Aug-2024

    Summary

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    Official Symbol
    DCAF10provided by VGNC
    Official Full Name
    DDB1 and CUL4 associated factor 10provided by VGNC
    Primary source
    VGNC:VGNC:87173
    See related
    Ensembl:ENSSSCG00000005356
    Gene type
    protein coding
    RefSeq status
    MODEL
    Organism
    Sus scrofa
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Laurasiatheria; Artiodactyla; Suina; Suidae; Sus
    Expression
    Ubiquitous expression in lung (RPKM 7.1), spleen (RPKM 5.7) and 8 other tissues See more
    Orthologs
    human mouse all
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    Genomic context

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    See DCAF10 in Genome Data Viewer
    Location:
    chromosome: 1
    Exon count:
    8
    Annotation release Status Assembly Chr Location
    106 current Sscrofa11.1 (GCF_000003025.6) 1 NC_010443.5 (238567612..238633471)
    105 previous assembly Sscrofa10.2 (GCF_000003025.5) 1 NC_010443.4 (266579012..266617379)

    Chromosome 1 - NC_010443.5Genomic Context describing neighboring genes Neighboring gene tRNA methyltransferase 10B Neighboring gene uncharacterized LOC102166243 Neighboring gene exosome component 3 Neighboring gene solute carrier family 25 member 51 Neighboring gene SH2 domain containing adaptor protein B

    Genomic regions, transcripts, and products

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    Go to nucleotide: Graphics FASTA GenBank

    Expression

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    • Project title: Transcriptome data used for gene annotation
    • Description: Nine kinds of tissues and a mixture of multiple tissues were sequenced for genome annotation
    • BioProject: PRJNA311523
    • Publication: PMID 27646534
    • Analysis date: Thu Dec 14 17:10:49 2017

    Bibliography

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    Related articles in PubMed

    1. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article
    2. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

    GeneRIFs: Gene References Into Functions

    General gene information

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    Homology

    Gene Ontology Provided by RefSeq

    Function Evidence Code Pubs
    enables protein binding IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Component Evidence Code Pubs
    part_of Cul4-RING E3 ubiquitin ligase complex IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 

    General protein information

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    Preferred Names
    DDB1- and CUL4-associated factor 10

    NCBI Reference Sequences (RefSeq)

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    RefSeqs of Annotated Genomes: Sus scrofa Annotation Release 106 details...Open this link in a new tab

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference Sscrofa11.1 Primary Assembly

    Genomic

    1. NC_010443.5 Reference Sscrofa11.1 Primary Assembly

      Range
      238567612..238633471
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_021066212.1 → XP_020921871.1  DDB1- and CUL4-associated factor 10 isoform X1

      UniProtKB/TrEMBL
      A0A4X1UVY0, A0A4X1UWT0, F1ST66
      Related
      ENSSSCP00000005749.3, ENSSSCT00000005896.5
      Conserved Domains (3) summary
      smart00320
      Location:520 → 558
      WD40; WD40 repeats
      sd00039
      Location:174 → 209
      7WD40; WD40 repeat [structural motif]
      cl25539
      Location:166 → 321
      WD40; WD40 domain, found in a number of eukaryotic proteins that cover a wide variety of functions including adaptor/regulatory modules in signal transduction, pre-mRNA processing and cytoskeleton assembly; typically contains a GH dipeptide 11-24 residues from ...

    2. XM_021066214.1 → XP_020921873.1  DDB1- and CUL4-associated factor 10 isoform X2

      UniProtKB/TrEMBL
      A0A4X1UVY0
      Conserved Domains (1) summary
      COG2319
      Location:171 → 492
      WD40; WD40 repeat [General function prediction only]

    RNA

    1. XR_002336817.1 RNA Sequence

    Nucleotide Protein
    Heading Accession and Version

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