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    Vom2r53 vomeronasal 2 receptor, 53 [ Rattus norvegicus (Norway rat) ]

    Gene ID: 286915, updated on 27-Nov-2024

    Summary

    Official Symbol
    Vom2r53provided by RGD
    Official Full Name
    vomeronasal 2 receptor, 53provided by RGD
    Primary source
    RGD:727942
    See related
    EnsemblRapid:ENSRNOG00000007730 AllianceGenome:RGD:727942
    Gene type
    protein coding
    RefSeq status
    VALIDATED
    Organism
    Rattus norvegicus
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha; Muroidea; Muridae; Murinae; Rattus
    Also known as
    RGD1310577
    Summary
    Predicted to enable G protein-coupled receptor activity. Predicted to be involved in G protein-coupled receptor signaling pathway. Predicted to be active in plasma membrane. [provided by Alliance of Genome Resources, Nov 2024]
    Expression
    Restricted expression toward (RPKM 1.4) See more
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    Genomic context

    See Vom2r53 in Genome Data Viewer
    Location:
    7q11
    Exon count:
    7
    Annotation release Status Assembly Chr Location
    RS_2024_02 current GRCr8 (GCF_036323735.1) 7 NC_086025.1 (10912012..10950649)
    RS_2023_06 previous assembly mRatBN7.2 (GCF_015227675.2) 7 NC_051342.1 (10267390..10300054)
    106 previous assembly Rnor_6.0 (GCF_000001895.5) 7 NC_005106.4 (13146062..13184258)

    Chromosome 7 - NC_086025.1Genomic Context describing neighboring genes Neighboring gene gonadotropin inducible ovarian transcription factor 1 Neighboring gene 60 kDa heat shock protein, mitochondrial-like Neighboring gene small nucleolar RNA SNORA26 Neighboring gene RIKEN cDNA 2610008E11 gene like

    Genomic regions, transcripts, and products

    Expression

    • Project title: A rat RNA-Seq transcriptomic BodyMap across 11 organs and 4 developmental stages
    • Description: 320 RNA samples isolated from 11 organs (adrenal gland, brain, heart, kidney, liver, lung, muscle, spleen, thymus, and testes or uterus) from both sexes of Fischer 344 rats across four developmental stages (2-, 6-, 21-, and 104-weeks-old)
    • BioProject: PRJNA238328
    • Publication: PMID 24510058
    • Analysis date: Mon Jun 6 17:44:12 2016

    General gene information

    Gene Ontology Provided by RGD

    Function Evidence Code Pubs
    enables G protein-coupled receptor activity IBA
    Inferred from Biological aspect of Ancestor
    more info
     
    Process Evidence Code Pubs
    involved_in G protein-coupled receptor signaling pathway IEA
    Inferred from Electronic Annotation
    more info
     
    Component Evidence Code Pubs
    is_active_in plasma membrane IBA
    Inferred from Biological aspect of Ancestor
    more info
     

    General protein information

    Preferred Names
    vomeronasal 2 receptor, 53
    Names
    putative pheromone receptor (Go-VN1)

    NCBI Reference Sequences (RefSeq)

    NEW Try the new Transcript table

    RefSeqs maintained independently of Annotated Genomes

    These reference sequences exist independently of genome builds. Explain

    These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

    mRNA and Protein(s)

    1. NM_173131.4NP_775154.3  vomeronasal 2 receptor, 53

      Status: VALIDATED

      Source sequence(s)
      JAXUCZ010000007
      UniProtKB/TrEMBL
      A6K914, E9PSS7
      Related
      ENSRNOP00000010203.4, ENSRNOT00000010203.5
      Conserved Domains (3) summary
      cd15283
      Location:590840
      7tmC_V2R_pheromone; vomeronasal type-2 pheromone receptors, member of the class C family of seven-transmembrane G protein-coupled receptors
      cd06365
      Location:41508
      PBP1_pheromone_receptor; Ligand-binding domain of the V2R pheromone receptor, a member of the family C receptors within the G-protein coupled receptor superfamily
      pfam07562
      Location:516569
      NCD3G; Nine Cysteines Domain of family 3 GPCR

    RefSeqs of Annotated Genomes: GCF_036323735.1-RS_2024_02

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference GRCr8

    Genomic

    1. NC_086025.1 Reference GRCr8

      Range
      10912012..10950649
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_063263079.1XP_063119149.1  vomeronasal 2 receptor, 53 isoform X1

    2. XM_063263080.1XP_063119150.1  vomeronasal 2 receptor, 53 isoform X2