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    Lhfpl1 lipoma HMGIC fusion partner-like 1 [ Mus musculus (house mouse) ]

    Gene ID: 237091, updated on 9-Dec-2024

    Summary

    Official Symbol
    Lhfpl1provided by MGI
    Official Full Name
    lipoma HMGIC fusion partner-like 1provided by MGI
    Primary source
    MGI:MGI:1891214
    See related
    Ensembl:ENSMUSG00000041700 AllianceGenome:MGI:1891214
    Gene type
    protein coding
    RefSeq status
    VALIDATED
    Organism
    Mus musculus
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha; Muroidea; Muridae; Murinae; Mus; Mus
    Also known as
    Lhfp
    Summary
    Predicted to be active in membrane. Is expressed in several structures, including dorsal root ganglion; genitourinary system; hemolymphoid system gland; intestine; and lung. Orthologous to human LHFPL1 (LHFPL tetraspan subfamily member 1). [provided by Alliance of Genome Resources, Dec 2024]
    Expression
    Biased expression in limb E14.5 (RPKM 1.9), bladder adult (RPKM 0.4) and 7 other tissues See more
    Orthologs
    NEW
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    Try the new Transcript table

    Genomic context

    See Lhfpl1 in Genome Data Viewer
    Location:
    X F2; X 66.54 cM
    Exon count:
    6
    Annotation release Status Assembly Chr Location
    RS_2024_02 current GRCm39 (GCF_000001635.27) X NC_000086.8 (144073355..144155388, complement)
    108.20200622 previous assembly GRCm38.p6 (GCF_000001635.26) X NC_000086.7 (145290359..145372392, complement)

    Chromosome X - NC_000086.8Genomic Context describing neighboring genes Neighboring gene crumbs homolog 1 pseudogene Neighboring gene glyceraldehyde-3-phosphate dehydrogenase pseudogene Neighboring gene STARR-seq mESC enhancer starr_48047 Neighboring gene STARR-seq mESC enhancer starr_48048 Neighboring gene angiomotin Neighboring gene prefoldin 5 pseudogene

    Genomic regions, transcripts, and products

    Expression

    • Project title: Mouse ENCODE transcriptome data
    • Description: RNA profiling data sets generated by the Mouse ENCODE project.
    • BioProject: PRJNA66167
    • Publication: PMID 25409824
    • Analysis date: n/a

    Variation

    Alleles

    Alleles of this type are documented at Mouse Genome Informatics  (MGI)
    • Endonuclease-mediated (1) 
    • Targeted (2) 

    General gene information

    Markers

    Gene Ontology Provided by MGI

    Function Evidence Code Pubs
    enables molecular_function ND
    No biological Data available
    more info
     
    Process Evidence Code Pubs
    involved_in biological_process ND
    No biological Data available
    more info
     
    Component Evidence Code Pubs
    is_active_in membrane IBA
    Inferred from Biological aspect of Ancestor
    more info
     
    located_in membrane IEA
    Inferred from Electronic Annotation
    more info
     

    General protein information

    Preferred Names
    LHFPL tetraspan subfamily member 1 protein
    Names
    lipoma HMGIC fusion partner-like 1 protein

    NCBI Reference Sequences (RefSeq)

    NEW Try the new Transcript table

    RefSeqs maintained independently of Annotated Genomes

    These reference sequences exist independently of genome builds. Explain

    These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

    mRNA and Protein(s)

    1. NM_178358.4NP_848135.1  LHFPL tetraspan subfamily member 1 protein precursor

      See identical proteins and their annotated locations for NP_848135.1

      Status: VALIDATED

      Source sequence(s)
      AK142526, BC051434
      Consensus CDS
      CCDS30458.1
      UniProtKB/Swiss-Prot
      Q80SV1
      Related
      ENSMUSP00000044054.10, ENSMUST00000040084.10
      Conserved Domains (1) summary
      pfam10242
      Location:8192
      L_HMGIC_fpl; Lipoma HMGIC fusion partner-like protein

    RefSeqs of Annotated Genomes: GCF_000001635.27-RS_2024_02

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference GRCm39 C57BL/6J

    Genomic

    1. NC_000086.8 Reference GRCm39 C57BL/6J

      Range
      144073355..144155388 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_030251332.1XP_030107192.1  LHFPL tetraspan subfamily member 1 protein isoform X2

      Conserved Domains (1) summary
      cl21598
      Location:8159
      PMP22_Claudin; PMP-22/EMP/MP20/Claudin family
    2. XM_006528801.4XP_006528864.1  LHFPL tetraspan subfamily member 1 protein isoform X1

      See identical proteins and their annotated locations for XP_006528864.1

      UniProtKB/Swiss-Prot
      Q80SV1
      Conserved Domains (1) summary
      pfam10242
      Location:8192
      L_HMGIC_fpl; Lipoma HMGIC fusion partner-like protein
    3. XM_006528800.3XP_006528863.1  LHFPL tetraspan subfamily member 1 protein isoform X1

      See identical proteins and their annotated locations for XP_006528863.1

      UniProtKB/Swiss-Prot
      Q80SV1
      Conserved Domains (1) summary
      pfam10242
      Location:8192
      L_HMGIC_fpl; Lipoma HMGIC fusion partner-like protein
    4. XM_006528803.4XP_006528866.1  LHFPL tetraspan subfamily member 1 protein isoform X2

      Conserved Domains (1) summary
      cl21598
      Location:8159
      PMP22_Claudin; PMP-22/EMP/MP20/Claudin family