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    Gm16638 predicted gene, 16638 [ Mus musculus (house mouse) ]

    Gene ID: 102631889, updated on 17-Aug-2024

    Summary

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    Official Symbol
    Gm16638provided by MGI
    Official Full Name
    predicted gene, 16638provided by MGI
    Primary source
    MGI:MGI:4439562
    See related
    Ensembl:ENSMUSG00000087088 AllianceGenome:MGI:4439562
    Gene type
    ncRNA
    RefSeq status
    VALIDATED
    Organism
    Mus musculus
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha; Muroidea; Muridae; Murinae; Mus; Mus
    Expression
    Ubiquitous expression in bladder adult (RPKM 2.5), cerebellum adult (RPKM 1.6) and 25 other tissues See more
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    Genomic context

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    See Gm16638 in Genome Data Viewer
    Location:
    7 D3; 7 47.43 cM
    Exon count:
    5
    Annotation release Status Assembly Chr Location
    RS_2024_02 current GRCm39 (GCF_000001635.27) 7 NC_000073.7 (83246256..83281049, complement)
    108.20200622 previous assembly GRCm38.p6 (GCF_000001635.26) 7 NC_000073.6 (83597048..83631841, complement)

    Chromosome 7 - NC_000073.7Genomic Context describing neighboring genes Neighboring gene STARR-seq mESC enhancer starr_19407 Neighboring gene STARR-positive B cell enhancer mm9_chr7:90574679-90574980 Neighboring gene retinoblastoma binding protein 6 pseudogene Neighboring gene predicted gene 10610 Neighboring gene STARR-seq mESC enhancer starr_19409 Neighboring gene transmembrane channel-like gene family 3 Neighboring gene CapStarr-seq enhancer MGSCv37_chr7:90803780-90804044 Neighboring gene StAR related lipid transfer domain containing 5 Neighboring gene CapStarr-seq enhancer MGSCv37_chr7:90809590-90809791 Neighboring gene interleukin 16 Neighboring gene STARR-positive B cell enhancer ABC_E8840 Neighboring gene 3-phosphoglycerate dehydrogenase, pseudogene 1

    Genomic regions, transcripts, and products

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    Go to nucleotide: Graphics FASTA GenBank

    Expression

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    • Project title: Mouse ENCODE transcriptome data
    • Description: RNA profiling data sets generated by the Mouse ENCODE project.
    • BioProject: PRJNA66167
    • Publication: PMID 25409824
    • Analysis date: n/a

    Bibliography

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    Related articles in PubMed

    1. The Vertebrate Genome Annotation browser 10 years on. Harrow JL, et al. Nucleic Acids Res, 2014 Jan. PMID 24316575, Free PMC Article
    2. Antisense transcription in the mammalian transcriptome. Katayama S, et al. Science, 2005 Sep 2. PMID 16141073
    3. High-efficiency full-length cDNA cloning. Carninci P, et al. Methods Enzymol, 1999. PMID 10349636
    4. RIKEN integrated sequence analysis (RISA) system--384-format sequencing pipeline with 384 multicapillary sequencer. Shibata K, et al. Genome Res, 2000 Nov. PMID 11076861, Free PMC Article
    5. Normalization and subtraction of cap-trapper-selected cDNAs to prepare full-length cDNA libraries for rapid discovery of new genes. Carninci P, et al. Genome Res, 2000 Oct. PMID 11042159, Free PMC Article

    See all (8) citations in PubMed

    GeneRIFs: Gene References Into Functions

    NCBI Reference Sequences (RefSeq)

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    RefSeqs maintained independently of Annotated Genomes

    These reference sequences exist independently of genome builds. Explain

    These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

    RNA

    1. NR_166696.1 RNA Sequence

      Status: VALIDATED

      Source sequence(s)
      AC158576

    2. NR_166697.1 RNA Sequence

      Status: VALIDATED

      Source sequence(s)
      AC158576
      Related
      ENSMUST00000148687.2

    RefSeqs of Annotated Genomes: GCF_000001635.27-RS_2024_02

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference GRCm39 C57BL/6J

    Genomic

    1. NC_000073.7 Reference GRCm39 C57BL/6J

      Range
      83246256..83281049 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)
    Nucleotide Protein Strain
    Heading Accession and Version

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