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    3300002A11Rik RIKEN cDNA 3300002A11 gene [ Mus musculus (house mouse) ]

    Gene ID: 100503812, updated on 22-Oct-2024

    Summary

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    Official Symbol
    3300002A11Rikprovided by MGI
    Official Full Name
    RIKEN cDNA 3300002A11 geneprovided by MGI
    Primary source
    MGI:MGI:1919073
    See related
    Ensembl:ENSMUSG00000033731 AllianceGenome:MGI:1919073
    Gene type
    ncRNA
    RefSeq status
    VALIDATED
    Organism
    Mus musculus
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha; Muroidea; Muridae; Murinae; Mus; Mus
    Also known as
    2700016B18Rik
    Expression
    Biased expression in lung adult (RPKM 3.7), ovary adult (RPKM 1.9) and 5 other tissues See more
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    Genomic context

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    See 3300002A11Rik in Genome Data Viewer
    Location:
    12 E; 12 50.0 cM
    Exon count:
    3
    Annotation release Status Assembly Chr Location
    RS_2024_02 current GRCm39 (GCF_000001635.27) 12 NC_000078.7 (99307290..99328087)
    108.20200622 previous assembly GRCm38.p6 (GCF_000001635.26) 12 NC_000078.6 (99341031..99361828)

    Chromosome 12 - NC_000078.7Genomic Context describing neighboring genes Neighboring gene forkhead box N3 Neighboring gene centromere protein W pseudogene Neighboring gene CapStarr-seq enhancer MGSCv37_chr12:100567328-100567481 Neighboring gene CapStarr-seq enhancer MGSCv37_chr12:100567519-100567702 Neighboring gene predicted gene, 46371 Neighboring gene VISTA enhancer mm12 Neighboring gene STARR-positive B cell enhancer ABC_E1861 Neighboring gene STARR-seq mESC enhancer starr_33022 Neighboring gene STARR-positive B cell enhancer ABC_E7165 Neighboring gene STARR-seq mESC enhancer starr_33023 Neighboring gene STARR-seq mESC enhancer starr_33024 Neighboring gene predicted gene, 51999 Neighboring gene CapStarr-seq enhancer MGSCv37_chr12:100797804-100797957 Neighboring gene STARR-positive B cell enhancer mm9_chr12:100801158-100801458 Neighboring gene predicted gene, 26839 Neighboring gene predicted gene, 53755

    Genomic regions, transcripts, and products

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    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. Mouse screen reveals multiple new genes underlying mouse and human hearing loss. Ingham NJ, et al. PLoS Biol, 2019 Apr. PMID 30973865, Free PMC Article
    2. The Vertebrate Genome Annotation browser 10 years on. Harrow JL, et al. Nucleic Acids Res, 2014 Jan. PMID 24316575, Free PMC Article
    3. Genetic determinants of micronucleus formation in vivo. Adams DJ, et al. Nature, 2024 Mar. PMID 38355793, Free PMC Article
    4. A conditional knockout resource for the genome-wide study of mouse gene function. Skarnes WC, et al. Nature, 2011 Jun 15. PMID 21677750, Free PMC Article
    5. Wnk1 kinase deficiency lowers blood pressure in mice: a gene-trap screen to identify potential targets for therapeutic intervention. Zambrowicz BP, et al. Proc Natl Acad Sci U S A, 2003 Nov 25. PMID 14610273, Free PMC Article

    See all (12) citations in PubMed

    GeneRIFs: Gene References Into Functions

    Variation

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    Alleles

    Alleles of this type are documented at Mouse Genome Informatics  (MGI)
    • Targeted (1) 

    General gene information

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    Gene Ontology Provided by MGI

    Function Evidence Code Pubs
    enables molecular_function ND
    No biological Data available
    more info
    		  
    Process Evidence Code Pubs
    involved_in biological_process ND
    No biological Data available
    more info
    		  
    Component Evidence Code Pubs
    is_active_in cellular_component ND
    No biological Data available
    more info
    		  

    NCBI Reference Sequences (RefSeq)

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    RefSeqs maintained independently of Annotated Genomes

    These reference sequences exist independently of genome builds. Explain

    These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

    RNA

    1. NR_166805.1 RNA Sequence

      Status: VALIDATED

      Source sequence(s)
      AC125409
      Related
      ENSMUST00000126476.9

    RefSeqs of Annotated Genomes: GCF_000001635.27-RS_2024_02

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference GRCm39 C57BL/6J

    Genomic

    1. NC_000078.7 Reference GRCm39 C57BL/6J

      Range
      99307290..99328087
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)
    Nucleotide Protein Strain
    Heading Accession and Version

    Gene LinkOut

    The following LinkOut resources are supplied by external providers. These providers are responsible for maintaining the links.