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These reference sequences exist independently of genome builds. Explain
These reference sequences are curated independently of the genome
annotation cycle, so their versions may not match the RefSeq versions in the current
genome build. Identify version mismatches by comparing the version of the RefSeq in
this section to the one reported in Genomic regions,
transcripts, and products above.
Genomic
-
NG_032968.2 RefSeqGene
- Range
-
5341..116740
- Download
- GenBank, FASTA, Sequence Viewer (Graphics)
mRNA and Protein(s)
-
NM_016350.5 → NP_057434.4 ninein isoform 6
See identical proteins and their annotated locations for NP_057434.4
Status: REVIEWED
- Description
- Transcript Variant: This variant (6) lacks an alternate in-frame exon in the central coding region and uses a distinct 3' coding region and 3' UTR, compared to variant 2. The resulting isoform (6) lacks an internal segment and has a shorter and distinct C-terminus, compared to isoform 2.
- Source sequence(s)
-
AF302773, AL133485, BC090932
- Consensus CDS
-
CCDS32078.2
- UniProtKB/TrEMBL
-
A0A0B4J215
- Related
- ENSP00000324210.10, ENST00000324330.13
- Conserved Domains (2) summary
-
- pfam05262
Location:304 → 515
- Borrelia_P83; Borrelia P83/100 protein
- cl25732
Location:425 → 1247
- SMC_N; RecF/RecN/SMC N terminal domain
-
NM_020921.4 → NP_065972.4 ninein isoform 2
Status: REVIEWED
- Description
- Transcript Variant: This variant (2) is the longest transcript and it encodes the longest isoform (2).
- Source sequence(s)
-
AL133485, AL606834
- Consensus CDS
-
CCDS91876.1
- UniProtKB/TrEMBL
-
A0A6F7YPF6
- Related
- ENSP00000436092.2, ENST00000530997.7
- Conserved Domains (3) summary
-
- COG1196
Location:920 → 1648
- Smc; Chromosome segregation ATPase [Cell cycle control, cell division, chromosome partitioning]
- TIGR02168
Location:407 → 825
- SMC_prok_B; chromosome segregation protein SMC, common bacterial type
- NF033454
Location:764 → 922
- BREX_5_MTaseX; BREX-5 system adenine-specific DNA-methyltransferase PglX
-
NM_182944.3 → NP_891989.3 ninein isoform 1
Status: REVIEWED
- Description
- Transcript Variant: This variant (1) contains a different 3' coding region and 3' UTR when compared to variant 2. The resulting isoform (1) has a distinct and shorter C-terminus, as compared to isoform 2.
- Source sequence(s)
-
AL133485, AL606834
- Consensus CDS
-
CCDS45103.1
- UniProtKB/TrEMBL
- A0A6F7YPF6, C9J066
- Related
- ENSP00000412391.1, ENST00000453196.6
- Conserved Domains (4) summary
-
- COG1196
Location:920 → 1648
- Smc; Chromosome segregation ATPase [Cell cycle control, cell division, chromosome partitioning]
- TIGR02168
Location:407 → 825
- SMC_prok_B; chromosome segregation protein SMC, common bacterial type
- TIGR04523
Location:1508 → 1957
- Mplasa_alph_rch; helix-rich Mycoplasma protein
- NF033454
Location:764 → 922
- BREX_5_MTaseX; BREX-5 system adenine-specific DNA-methyltransferase PglX
-
NM_182946.2 → NP_891991.2 ninein isoform 5
Status: REVIEWED
- Description
- Transcript Variant: This variant (5) has multiple differences in the coding region and 3' UTR when compared to variant 2. The resulting isoform (5) has a distinct and shorter C-terminus as compared to isoform 2. Isoform 5 has also been referred to as hNinein-Lm.
- Source sequence(s)
-
AL133485, AL606834
- Consensus CDS
-
CCDS32079.1
- UniProtKB/Swiss-Prot
- A6NDB8, B7WPA3, C9JSB6, C9JSG2, C9JXL2, Q5BKU3, Q6P0P6, Q8N4C6, Q9BWU6, Q9C012, Q9C013, Q9C014, Q9H5I6, Q9HAT7, Q9HBY5, Q9HCK7, Q9UH61
- UniProtKB/TrEMBL
-
A0A6F7YPF6
- Related
- ENSP00000371472.3, ENST00000382041.7
- Conserved Domains (3) summary
-
- COG1196
Location:920 → 1648
- Smc; Chromosome segregation ATPase [Cell cycle control, cell division, chromosome partitioning]
- TIGR02168
Location:407 → 825
- SMC_prok_B; chromosome segregation protein SMC, common bacterial type
- NF033454
Location:764 → 922
- BREX_5_MTaseX; BREX-5 system adenine-specific DNA-methyltransferase PglX
The following sections contain reference sequences that belong to a
specific genome build. Explain
This section includes genomic Reference
Sequences (RefSeqs) from all assemblies on which this gene is annotated, such as
RefSeqs for chromosomes and scaffolds (contigs) from both reference and alternate
assemblies. Model RNAs and proteins are also reported here.
Reference GRCh38.p14 Primary Assembly
Genomic
-
NC_000014.9 Reference GRCh38.p14 Primary Assembly
- Range
-
50719763..50831503 complement
- Download
- GenBank, FASTA, Sequence Viewer (Graphics)
mRNA and Protein(s)
-
XM_047431452.1 → XP_047287408.1 ninein isoform X25
-
XM_047431439.1 → XP_047287395.1 ninein isoform X11
- UniProtKB/TrEMBL
-
A0A6F7YPF6
-
XM_047431453.1 → XP_047287409.1 ninein isoform X23
-
XM_047431438.1 → XP_047287394.1 ninein isoform X10
- UniProtKB/TrEMBL
-
A0A6F7YPF6
- Related
- ENSP00000374519.3, ENST00000389869.7
-
XM_047431450.1 → XP_047287406.1 ninein isoform X23
-
XM_047431442.1 → XP_047287398.1 ninein isoform X15
- UniProtKB/TrEMBL
-
A0A0B4J215
-
XM_047431432.1 → XP_047287388.1 ninein isoform X3
- UniProtKB/TrEMBL
-
A0A6F7YPF6
-
XM_047431445.1 → XP_047287401.1 ninein isoform X18
- UniProtKB/TrEMBL
-
A0A0B4J215
-
XM_047431440.1 → XP_047287396.1 ninein isoform X13
- UniProtKB/TrEMBL
-
A0A0B4J215
- Related
- ENSP00000516509.1, ENST00000706706.1
-
XM_047431434.1 → XP_047287390.1 ninein isoform X6
- UniProtKB/TrEMBL
-
A0A6F7YPF6
-
XM_047431441.1 → XP_047287397.1 ninein isoform X14
- UniProtKB/TrEMBL
-
A0A0B4J215
-
XM_047431431.1 → XP_047287387.1 ninein isoform X2
- UniProtKB/TrEMBL
-
A0A6F7YPF6
-
XM_047431443.1 → XP_047287399.1 ninein isoform X16
- UniProtKB/TrEMBL
-
A0A0B4J215
-
XM_011536822.3 → XP_011535124.1 ninein isoform X12
- UniProtKB/TrEMBL
-
A0A0B4J215
- Conserved Domains (5) summary
-
- COG1196
Location:455 → 1277
- Smc; Chromosome segregation ATPase [Cell cycle control, cell division, chromosome partitioning]
- cd16269
Location:821 → 832
- GBP_C; coiled coil [structural motif]
- cl19219
Location:505 → 597
- DUF342; Protein of unknown function (DUF342)
- cl20817
Location:734 → 850
- GBP_C; Guanylate-binding protein, C-terminal domain
- cl23750
Location:441 → 534
- vATP-synt_E; ATP synthase (E/31 kDa) subunit
-
XM_047431433.1 → XP_047287389.1 ninein isoform X4
- UniProtKB/TrEMBL
-
A0A6F7YPF6
-
XM_024449622.2 → XP_024305390.1 ninein isoform X1
- UniProtKB/TrEMBL
-
A0A6F7YPF6
- Conserved Domains (3) summary
-
- pfam04111
Location:859 → 1003
- APG6; Autophagy protein Apg6
- cl25732
Location:437 → 855
- SMC_N; RecF/RecN/SMC N terminal domain
- cl28159
Location:335 → 455
- Aminotran_5; Aminotransferase class-V
-
XM_047431449.1 → XP_047287405.1 ninein isoform X22
- UniProtKB/TrEMBL
-
A0A0B4J215
-
XM_047431451.1 → XP_047287407.1 ninein isoform X24
- UniProtKB/TrEMBL
-
A0A0B4J215
-
XM_047431446.1 → XP_047287402.1 ninein isoform X19
- UniProtKB/TrEMBL
-
A0A0B4J215
-
XM_047431447.1 → XP_047287403.1 ninein isoform X20
- UniProtKB/TrEMBL
-
A0A0B4J215
-
XM_047431435.1 → XP_047287391.1 ninein isoform X7
- UniProtKB/TrEMBL
-
A0A6F7YPF6
-
XM_047431444.1 → XP_047287400.1 ninein isoform X17
- UniProtKB/TrEMBL
-
A0A0B4J215
-
XM_011536819.4 → XP_011535121.1 ninein isoform X5
- UniProtKB/TrEMBL
-
A0A6F7YPF6
- Conserved Domains (5) summary
-
- COG1196
Location:950 → 1678
- Smc; Chromosome segregation ATPase [Cell cycle control, cell division, chromosome partitioning]
- cd16269
Location:821 → 832
- GBP_C; coiled coil [structural motif]
- cl19219
Location:505 → 597
- DUF342; Protein of unknown function (DUF342)
- cl20817
Location:734 → 850
- GBP_C; Guanylate-binding protein, C-terminal domain
- cl23750
Location:441 → 534
- vATP-synt_E; ATP synthase (E/31 kDa) subunit
-
XM_047431437.1 → XP_047287393.1 ninein isoform X9
- UniProtKB/TrEMBL
- E9PN67, Q5XUU0
- Related
- ENSP00000432924.1, ENST00000476352.5
-
XM_047431448.1 → XP_047287404.1 ninein isoform X21
- UniProtKB/TrEMBL
-
A0A0B4J215
-
XM_047431436.1 → XP_047287392.1 ninein isoform X8
- UniProtKB/TrEMBL
-
Q5XUU0
-
XM_047431454.1 → XP_047287410.1 ninein isoform X26
- UniProtKB/TrEMBL
-
A0A0B4J215
- Related
- ENSP00000431485.2, ENST00000485005.2
Alternate T2T-CHM13v2.0
Genomic
-
NC_060938.1 Alternate T2T-CHM13v2.0
- Range
-
44925893..45037887 complement
- Download
- GenBank, FASTA, Sequence Viewer (Graphics)
mRNA and Protein(s)
-
XM_054376195.1 → XP_054232170.1 ninein isoform X25
-
XM_054376181.1 → XP_054232156.1 ninein isoform X11
- UniProtKB/TrEMBL
-
A0A6F7YPF6
-
XM_054376196.1 → XP_054232171.1 ninein isoform X23
-
XM_054376180.1 → XP_054232155.1 ninein isoform X10
- UniProtKB/TrEMBL
-
A0A6F7YPF6
-
XM_054376193.1 → XP_054232168.1 ninein isoform X23
-
XM_054376185.1 → XP_054232160.1 ninein isoform X15
- UniProtKB/TrEMBL
-
A0A0B4J215
-
XM_054376173.1 → XP_054232148.1 ninein isoform X3
- UniProtKB/TrEMBL
-
A0A6F7YPF6
-
XM_054376188.1 → XP_054232163.1 ninein isoform X18
- UniProtKB/TrEMBL
-
A0A0B4J215
-
XM_054376183.1 → XP_054232158.1 ninein isoform X13
- UniProtKB/TrEMBL
-
A0A0B4J215
-
XM_054376176.1 → XP_054232151.1 ninein isoform X6
- UniProtKB/TrEMBL
-
A0A6F7YPF6
-
XM_054376184.1 → XP_054232159.1 ninein isoform X14
- UniProtKB/TrEMBL
-
A0A0B4J215
-
XM_054376172.1 → XP_054232147.1 ninein isoform X2
- UniProtKB/TrEMBL
-
A0A6F7YPF6
-
XM_054376182.1 → XP_054232157.1 ninein isoform X12
- UniProtKB/TrEMBL
-
A0A0B4J215
-
XM_054376171.1 → XP_054232146.1 ninein isoform X1
- UniProtKB/TrEMBL
-
A0A6F7YPF6
-
XM_054376174.1 → XP_054232149.1 ninein isoform X4
- UniProtKB/TrEMBL
-
A0A6F7YPF6
-
XM_054376186.1 → XP_054232161.1 ninein isoform X16
- UniProtKB/TrEMBL
-
A0A0B4J215
-
XM_054376189.1 → XP_054232164.1 ninein isoform X19
- UniProtKB/TrEMBL
-
A0A0B4J215
-
XM_054376177.1 → XP_054232152.1 ninein isoform X7
- UniProtKB/TrEMBL
-
A0A6F7YPF6
-
XM_054376175.1 → XP_054232150.1 ninein isoform X5
- UniProtKB/TrEMBL
-
A0A6F7YPF6
-
XM_054376190.1 → XP_054232165.1 ninein isoform X20
- UniProtKB/TrEMBL
-
A0A0B4J215
-
XM_054376187.1 → XP_054232162.1 ninein isoform X17
- UniProtKB/TrEMBL
-
A0A0B4J215
-
XM_054376192.1 → XP_054232167.1 ninein isoform X22
- UniProtKB/TrEMBL
-
A0A0B4J215
-
XM_054376194.1 → XP_054232169.1 ninein isoform X24
- UniProtKB/TrEMBL
-
A0A0B4J215
-
XM_054376179.1 → XP_054232154.1 ninein isoform X9
- UniProtKB/TrEMBL
-
Q5XUU0
-
XM_054376178.1 → XP_054232153.1 ninein isoform X8
- UniProtKB/TrEMBL
-
Q5XUU0
-
XM_054376191.1 → XP_054232166.1 ninein isoform X21
- UniProtKB/TrEMBL
-
A0A0B4J215
-
XM_054376197.1 → XP_054232172.1 ninein isoform X26
- UniProtKB/TrEMBL
-
A0A0B4J215
The following Reference Sequences have been suppressed. Explain
These RefSeqs were suppressed for the
cited reason(s). Suppressed RefSeqs do not appear in BLAST databases, related
sequence links, or BLAST links (BLink), but may still be retrieved by clicking on
their accession.version below.
-
NM_182945.1: Suppressed sequence
- Description
- NM_182945.1: This RefSeq was permanently suppressed because currently there is insufficient support for the transcript and the protein.