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These reference sequences exist independently of genome builds. Explain
These reference sequences are curated independently of the genome
annotation cycle, so their versions may not match the RefSeq versions in the current
genome build. Identify version mismatches by comparing the version of the RefSeq in
this section to the one reported in Genomic regions,
transcripts, and products above.
mRNA and Protein(s)
-
NM_001130006.2 → NP_001123478.2 eukaryotic peptide chain release factor GTP-binding subunit ERF3A isoform 2
Status: VALIDATED
- Description
- Transcript Variant: This variant (2) uses an alternate in-frame splice site in an internal exon, compared to variant 1, resulting in an isoform (2) that is 1 aa shorter than isoform 1.
- Source sequence(s)
-
AC007216
- Consensus CDS
-
CCDS45413.1
- UniProtKB/TrEMBL
-
B4DQM6
- Related
- ENSP00000408399.2, ENST00000439887.6
- Conserved Domains (2) summary
-
- COG5256
Location:209 → 633
- TEF1; Translation elongation factor EF-1alpha (GTPase) [Translation, ribosomal structure and biogenesis]
- pfam07145
Location:65 → 81
- PAM2; Ataxin-2 C-terminal region
-
NM_001130007.2 → NP_001123479.1 eukaryotic peptide chain release factor GTP-binding subunit ERF3A isoform 3
See identical proteins and their annotated locations for NP_001123479.1
Status: VALIDATED
- Description
- Transcript Variant: This variant (3) differs in the 5' UTR and lacks a portion of the 5' coding region, compared to variant 1. The resulting isoform (3) is shorter at the N-terminal, compared to isoform 1.
- Source sequence(s)
-
AC007216, AK315267, BM666324, BT006722
- Consensus CDS
-
CCDS45414.1
- UniProtKB/Swiss-Prot
- J3KQG6, P15170, Q96GF2
- UniProtKB/TrEMBL
- A8K2W7, B2RCT6
- Related
- ENSP00000399539.2, ENST00000420576.6
- Conserved Domains (1) summary
-
- COG5256
Location:72 → 496
- TEF1; Translation elongation factor EF-1alpha (GTPase) [Translation, ribosomal structure and biogenesis]
-
NM_002094.4 → NP_002085.3 eukaryotic peptide chain release factor GTP-binding subunit ERF3A isoform 1
Status: VALIDATED
- Description
- Transcript Variant: This variant (1) encodes the longest isoform (1).
- Source sequence(s)
-
AC007216
- Consensus CDS
-
CCDS45412.1
- Related
- ENSP00000398131.2, ENST00000434724.7
- Conserved Domains (2) summary
-
- COG5256
Location:210 → 634
- TEF1; Translation elongation factor EF-1alpha (GTPase) [Translation, ribosomal structure and biogenesis]
- pfam07145
Location:64 → 81
- PAM2; Ataxin-2 C-terminal region
The following sections contain reference sequences that belong to a
specific genome build. Explain
This section includes genomic Reference
Sequences (RefSeqs) from all assemblies on which this gene is annotated, such as
RefSeqs for chromosomes and scaffolds (contigs) from both reference and alternate
assemblies. Model RNAs and proteins are also reported here.
Reference GRCh38.p14 Primary Assembly
Genomic
-
NC_000016.10 Reference GRCh38.p14 Primary Assembly
- Range
-
11868128..11916654 complement
- Download
- GenBank, FASTA, Sequence Viewer (Graphics)
mRNA and Protein(s)
-
XM_047434035.1 → XP_047289991.1 eukaryotic peptide chain release factor GTP-binding subunit ERF3A isoform X3
- UniProtKB/TrEMBL
- A8K2W7, B2RCT6
-
XM_047434034.1 → XP_047289990.1 eukaryotic peptide chain release factor GTP-binding subunit ERF3A isoform X2
- UniProtKB/TrEMBL
- A8K2W7, B2RCT6
-
XM_047434033.1 → XP_047289989.1 eukaryotic peptide chain release factor GTP-binding subunit ERF3A isoform X1
- UniProtKB/TrEMBL
- A8K2W7, B2RCT6
Alternate T2T-CHM13v2.0
Genomic
-
NC_060940.1 Alternate T2T-CHM13v2.0
- Range
-
11904164..11952697 complement
- Download
- GenBank, FASTA, Sequence Viewer (Graphics)
mRNA and Protein(s)
-
XM_054380181.1 → XP_054236156.1 eukaryotic peptide chain release factor GTP-binding subunit ERF3A isoform X3
- UniProtKB/TrEMBL
- A8K2W7, B2RCT6
-
XM_054380180.1 → XP_054236155.1 eukaryotic peptide chain release factor GTP-binding subunit ERF3A isoform X2
- UniProtKB/TrEMBL
- A8K2W7, B2RCT6
-
XM_054380179.1 → XP_054236154.1 eukaryotic peptide chain release factor GTP-binding subunit ERF3A isoform X1
- UniProtKB/TrEMBL
- A8K2W7, B2RCT6