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    Wdr97 WD repeat domain 97 [ Mus musculus (house mouse) ]

    Gene ID: 102638882, updated on 9-Dec-2024

    Summary

    Official Symbol
    Wdr97provided by MGI
    Official Full Name
    WD repeat domain 97provided by MGI
    Primary source
    MGI:MGI:5594498
    See related
    Ensembl:ENSMUSG00000109179 AllianceGenome:MGI:5594498
    Gene type
    protein coding
    RefSeq status
    VALIDATED
    Organism
    Mus musculus
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha; Muroidea; Muridae; Murinae; Mus; Mus
    Also known as
    Gm35339
    Summary
    Orthologous to human WDR97 (WD repeat domain 97). [provided by Alliance of Genome Resources, Dec 2024]
    Expression
    Biased expression in testis adult (RPKM 22.4), thymus adult (RPKM 2.4) and 12 other tissues See more
    Orthologs
    NEW
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    Genomic context

    See Wdr97 in Genome Data Viewer
    Location:
    15 D3; 15
    Exon count:
    23
    Annotation release Status Assembly Chr Location
    RS_2024_02 current GRCm39 (GCF_000001635.27) 15 NC_000081.7 (76238649..76249141)
    108.20200622 previous assembly GRCm38.p6 (GCF_000001635.26) 15 NC_000081.6 (76354449..76364941)

    Chromosome 15 - NC_000081.7Genomic Context describing neighboring genes Neighboring gene SHANK-associated RH domain interacting protein Neighboring gene MAF1 homolog, negative regulator of RNA polymerase III Neighboring gene STARR-seq mESC enhancer starr_39052 Neighboring gene STARR-positive B cell enhancer ABC_E11592 Neighboring gene HGH1 homolog Neighboring gene testis-specific serine kinase 5

    Genomic regions, transcripts, and products

    Expression

    • Project title: Mouse ENCODE transcriptome data
    • Description: RNA profiling data sets generated by the Mouse ENCODE project.
    • BioProject: PRJNA66167
    • Publication: PMID 25409824
    • Analysis date: n/a

    Interactions

    Products Interactant Other Gene Complex Source Pubs Description

    General protein information

    Preferred Names
    WD repeat-containing protein 97

    NCBI Reference Sequences (RefSeq)

    NEW Try the new Transcript table

    RefSeqs maintained independently of Annotated Genomes

    These reference sequences exist independently of genome builds. Explain

    These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

    mRNA and Protein(s)

    1. NM_001378250.1NP_001365179.1  WD repeat-containing protein 97

      Status: VALIDATED

      Source sequence(s)
      AC155074
      UniProtKB/TrEMBL
      A0A140LHH9
      Related
      ENSMUSP00000146420.3, ENSMUST00000208833.3
      Conserved Domains (3) summary
      smart00320
      Location:696722
      WD40; WD40 repeats
      sd00039
      Location:302337
      7WD40; WD40 repeat [structural motif]
      cl29593
      Location:297630
      WD40; WD40 domain, found in a number of eukaryotic proteins that cover a wide variety of functions including adaptor/regulatory modules in signal transduction, pre-mRNA processing and cytoskeleton assembly; typically contains a GH dipeptide 11-24 residues from ...

    RefSeqs of Annotated Genomes: GCF_000001635.27-RS_2024_02

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference GRCm39 C57BL/6J

    Genomic

    1. NC_000081.7 Reference GRCm39 C57BL/6J

      Range
      76238649..76249141
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_036159051.1XP_036014944.1  WD repeat-containing protein 97 isoform X2

      Conserved Domains (2) summary
      sd00039
      Location:302337
      7WD40; WD40 repeat [structural motif]
      cl29593
      Location:297630
      WD40; WD40 domain, found in a number of eukaryotic proteins that cover a wide variety of functions including adaptor/regulatory modules in signal transduction, pre-mRNA processing and cytoskeleton assembly; typically contains a GH dipeptide 11-24 residues from ...
    2. XM_006521619.2XP_006521682.1  WD repeat-containing protein 97 isoform X1

      Conserved Domains (2) summary
      sd00039
      Location:302337
      7WD40; WD40 repeat [structural motif]
      cl29593
      Location:297630
      WD40; WD40 domain, found in a number of eukaryotic proteins that cover a wide variety of functions including adaptor/regulatory modules in signal transduction, pre-mRNA processing and cytoskeleton assembly; typically contains a GH dipeptide 11-24 residues from ...
    3. XM_006521622.4XP_006521685.1  WD repeat-containing protein 97 isoform X4

      See identical proteins and their annotated locations for XP_006521685.1

      Conserved Domains (2) summary
      sd00039
      Location:302337
      7WD40; WD40 repeat [structural motif]
      cl29593
      Location:297630
      WD40; WD40 domain, found in a number of eukaryotic proteins that cover a wide variety of functions including adaptor/regulatory modules in signal transduction, pre-mRNA processing and cytoskeleton assembly; typically contains a GH dipeptide 11-24 residues from ...
    4. XM_006521621.3XP_006521684.1  WD repeat-containing protein 97 isoform X3

      Conserved Domains (2) summary
      sd00039
      Location:214249
      7WD40; WD40 repeat [structural motif]
      cl29593
      Location:209542
      WD40; WD40 domain, found in a number of eukaryotic proteins that cover a wide variety of functions including adaptor/regulatory modules in signal transduction, pre-mRNA processing and cytoskeleton assembly; typically contains a GH dipeptide 11-24 residues from ...
    5. XM_006521623.5XP_006521686.1  WD repeat-containing protein 97 isoform X5