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    yncD putative TonB-dependent outer membrane receptor [ Escherichia coli str. K-12 substr. MG1655 ]

    Gene ID: 946015, updated on 3-Dec-2024

    Summary

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    Official Symbol
    yncD
    Official Full Name
    putative TonB-dependent outer membrane receptor
    Primary source
    ECOCYC:G6762
    Locus tag
    b1451
    See related
    ASAP:ABE-0004839
    Gene type
    protein coding
    RefSeq status
    PROVISIONAL
    Organism
    Escherichia coli str. K-12 substr. MG1655 (strain: K-12, substrain: MG1655)
    Lineage
    Bacteria; Pseudomonadota; Gammaproteobacteria; Enterobacterales; Enterobacteriaceae; Escherichia
    Also known as
    ECK1445
    Summary
    yncD and fhuA are paralogs. [More information is available at EcoGene: EG13774]. YncD is an uncharacterized protein. [More information is available at EcoCyc: G6762].
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    Genomic context

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    Sequence:
    NC_000913.3 (1520963..1523065, complement)

    NC_000913.3Genomic Context describing neighboring genes Neighboring gene NADPH-dependent curcumin/dihydrocurcumin reductase Neighboring gene DNA-binding transcriptional dual regulator McbR Neighboring gene PQQ-like domain-containing protein YncE Neighboring gene L-asparagine transporter

    Genomic regions, transcripts, and products

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    Genomic Sequence:
    NC_000913.3

    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. The crystal structure of the TonB-dependent transporter YncD reveals a positively charged substrate-binding site. Grinter R, et al. Acta Crystallogr D Struct Biol, 2020 May 1. PMID 32355044, Free PMC Article
    2. The beta-barrel finder (BBF) program, allowing identification of outer membrane beta-barrel proteins encoded within prokaryotic genomes. Zhai Y, et al. Protein Sci, 2002 Sep. PMID 12192075, Free PMC Article
    3. BOMP: a program to predict integral beta-barrel outer membrane proteins encoded within genomes of Gram-negative bacteria. Berven FS, et al. Nucleic Acids Res, 2004 Jul 1. PMID 15215418, Free PMC Article
    4. Highly accurate genome sequences of Escherichia coli K-12 strains MG1655 and W3110. Hayashi K, et al. Mol Syst Biol, 2006. PMID 16738553, Free PMC Article
    5. The complete genome sequence of Escherichia coli K-12. Blattner FR, et al. Science, 1997 Sep 5. PMID 9278503

    See all (6) citations in PubMed

    GeneRIFs: Gene References Into Functions

    What's a GeneRIF?
    1. The crystal structure of the TonB-dependent transporter YncD reveals a positively charged substrate-binding site.
      Title: The crystal structure of the TonB-dependent transporter YncD reveals a positively charged substrate-binding site.
    Submit: New GeneRIF Correction

    General gene information

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    Homology

    General protein information

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    Preferred Names
    putative TonB-dependent outer membrane receptor

    NCBI Reference Sequences (RefSeq)

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    Genome Annotation

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference assembly

    Genomic

    1. NC_000913.3 Reference assembly

      Range
      1520963..1523065 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. NP_415968.1 putative TonB-dependent outer membrane receptor [Escherichia coli str. K-12 substr. MG1655]

      See identical proteins and their annotated locations for NP_415968.1

      Status: PROVISIONAL

      UniProtKB/TrEMBL
      A0A8S7QY40
      Conserved Domains (1) summary
      COG1629
      Location:8 → 697
      CirA; Outer membrane receptor proteins, mostly Fe transport [Inorganic ion transport and metabolism]
    Nucleotide Protein
    Heading Accession and Version

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