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    rzpD phage endopeptidase [ Escherichia coli O157:H7 str. Sakai ]

    Gene ID: 917558, updated on 6-Oct-2023

    Summary

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    Gene symbol
    rzpD
    Gene description
    phage endopeptidase
    Locus tag
    ECs_0820
    Gene type
    protein coding
    RefSeq status
    PROVISIONAL
    Organism
    Escherichia coli O157:H7 str. Sakai (strain: Sakai, substrain: RIMD 0509952, serovar: O157:H7)
    Lineage
    Bacteria; Proteobacteria; Gammaproteobacteria; Enterobacterales; Enterobacteriaceae; Escherichia
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    Genomic context

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    Sequence:
    NC_002695.2 (902516..902983)

    NC_002695.2Genomic Context describing neighboring genes Neighboring gene hypothetical protein Neighboring gene phage holin protein Neighboring gene phage endolysin Neighboring gene phage lipoprotein precursor Neighboring gene hypothetical protein Neighboring gene phage terminase small subunit Neighboring gene phage terminase large subunit

    Genomic regions, transcripts, and products

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    Genomic Sequence:
    NC_002695.2

    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. Comparative analysis of the whole set of rRNA operons between an enterohemorrhagic Escherichia coli O157:H7 Sakai strain and an Escherichia coli K-12 strain MG1655. Ohnishi M, et al. Syst Appl Microbiol, 2000 Oct. PMID 11108008
    2. Complete nucleotide sequence of the prophage VT2-Sakai carrying the verotoxin 2 genes of the enterohemorrhagic Escherichia coli O157:H7 derived from the Sakai outbreak. Makino K, et al. Genes Genet Syst, 1999 Oct. PMID 10734605
    3. Complete nucleotide sequence of the prophage VT1-Sakai carrying the Shiga toxin 1 genes of the enterohemorrhagic Escherichia coli O157:H7 strain derived from the Sakai outbreak. Yokoyama K, et al. Gene, 2000 Nov 27. PMID 11111050
    4. Complete genome sequence of enterohemorrhagic Escherichia coli O157:H7 and genomic comparison with a laboratory strain K-12. Hayashi T, et al. DNA Res, 2001 Feb 28. PMID 11258796

    GeneRIFs: Gene References Into Functions

    General protein information

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    Preferred Names
    phage endopeptidase

    NCBI Reference Sequences (RefSeq)

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    Genome Annotation

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference assembly

    Genomic

    1. NC_002695.2 Reference assembly

      Range
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. NP_308847.1 phage endopeptidase [Escherichia coli O157:H7 str. Sakai]

      See identical proteins and their annotated locations for NP_308847.1

      Status: PROVISIONAL

      UniProtKB/TrEMBL
      A0A0H3MXI9
      Conserved Domains (1) summary
      pfam03245
      Location:29 → 154
      Phage_lysis; Bacteriophage Rz lysis protein
    Nucleotide Protein
    Heading Accession and Version

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