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    ycaK putative oxidoreductase YcaK [ Escherichia coli str. K-12 substr. MG1655 ]

    Gene ID: 945520, updated on 17-Dec-2024

    Summary

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    Official Symbol
    ycaK
    Official Full Name
    putative oxidoreductase YcaK
    Primary source
    ECOCYC:EG12702
    Locus tag
    b0901
    See related
    ASAP:ABE-0003065
    Gene type
    protein coding
    RefSeq status
    PROVISIONAL
    Organism
    Escherichia coli str. K-12 substr. MG1655 (strain: K-12, substrain: MG1655)
    Lineage
    Bacteria; Pseudomonadota; Gammaproteobacteria; Enterobacterales; Enterobacteriaceae; Escherichia
    Also known as
    ECK0892
    Summary
    Based on sequence similarity, YcaK is predicted to be an NAD(P)H dehydrogenase . [More information is available at EcoCyc: EG12702].
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    Genomic context

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    Sequence:
    NC_000913.3 (949668..950258)

    NC_000913.3Genomic Context describing neighboring genes Neighboring gene putative transporter YcaM Neighboring gene putative DNA-binding transcriptional regulator YcaN Neighboring gene pyruvate formate-lyase activating enzyme Neighboring gene pyruvate formate-lyase

    Genomic regions, transcripts, and products

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    Genomic Sequence:
    NC_000913.3

    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. Primary structures of Escherichia coli pyruvate formate-lyase and pyruvate-formate-lyase-activating enzyme deduced from the DNA nucleotide sequences. Rödel W, et al. Eur J Biochem, 1988 Oct 15. PMID 3053170
    2. Discovery and evaluation of Escherichia coli nitroreductases that activate the anti-cancer prodrug CB1954. Prosser GA, et al. Biochem Pharmacol, 2010 Mar 1. PMID 19852945
    3. An expanded genome-scale model of Escherichia coli K-12 (iJR904 GSM/GPR). Reed JL, et al. Genome Biol, 2003. PMID 12952533, Free PMC Article
    4. Detection of new genes in a bacterial genome using Markov models for three gene classes. Borodovsky M, et al. Nucleic Acids Res, 1995 Sep 11. PMID 7567469, Free PMC Article
    5. A functional update of the Escherichia coli K-12 genome. Serres MH, et al. Genome Biol, 2001. PMID 11574054, Free PMC Article

    See all (8) citations in PubMed

    GeneRIFs: Gene References Into Functions

    General gene information

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    Homology

    Gene Ontology Provided by EcoCyc

    Function Evidence Code Pubs
    enables FMN binding IDA
    Inferred from Direct Assay
    more info
    		 PubMed 
    enables NAD(P)H dehydrogenase (quinone) activity IBA
    Inferred from Biological aspect of Ancestor
    more info
    		  
    enables oxidoreductase activity IEA
    Inferred from Electronic Annotation
    more info
    		  
    Component Evidence Code Pubs
    is_active_in cytosol IBA
    Inferred from Biological aspect of Ancestor
    more info
    		  

    General protein information

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    Preferred Names
    putative oxidoreductase YcaK

    NCBI Reference Sequences (RefSeq)

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    Genome Annotation

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference assembly

    Genomic

    1. NC_000913.3 Reference assembly

      Range
      949668..950258
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. NP_415421.1 putative oxidoreductase YcaK [Escherichia coli str. K-12 substr. MG1655]

      See identical proteins and their annotated locations for NP_415421.1

      Status: PROVISIONAL

      UniProtKB/TrEMBL
      A0A376X1R0
      Conserved Domains (1) summary
      PRK09739
      Location:1 → 196
      PRK09739; NAD(P)H oxidoreductase
    Nucleotide Protein
    Heading Accession and Version

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