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    hsdS restriction-modification system protein HsdS [ Escherichia coli O157:H7 str. Sakai ]

    Gene ID: 913608, updated on 19-Jun-2021

    Summary

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    Gene symbol
    hsdS
    Gene description
    restriction-modification system protein HsdS
    Locus tag
    ECs_5306
    Gene type
    protein coding
    RefSeq status
    PROVISIONAL
    Organism
    Escherichia coli O157:H7 str. Sakai (strain: Sakai, substrain: RIMD 0509952, serovar: O157:H7)
    Lineage
    Bacteria; Proteobacteria; Gammaproteobacteria; Enterobacterales; Enterobacteriaceae; Escherichia
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    Genomic context

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    Sequence:
    NC_002695.2 (5437980..5439734, complement)

    NC_002695.2Genomic Context describing neighboring genes Neighboring gene hypothetical protein Neighboring gene toxic peptide regulated by antisense sRNA symR Neighboring gene DNA methyltransferase M Neighboring gene type I restriction-modification enzyme R subunit Neighboring gene hypothetical protein

    Genomic regions, transcripts, and products

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    Genomic Sequence:
    NC_002695.2

    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. Comparative analysis of the whole set of rRNA operons between an enterohemorrhagic Escherichia coli O157:H7 Sakai strain and an Escherichia coli K-12 strain MG1655. Ohnishi M, et al. Syst Appl Microbiol, 2000 Oct. PMID 11108008
    2. Complete nucleotide sequence of the prophage VT2-Sakai carrying the verotoxin 2 genes of the enterohemorrhagic Escherichia coli O157:H7 derived from the Sakai outbreak. Makino K, et al. Genes Genet Syst, 1999 Oct. PMID 10734605
    3. Complete nucleotide sequence of the prophage VT1-Sakai carrying the Shiga toxin 1 genes of the enterohemorrhagic Escherichia coli O157:H7 strain derived from the Sakai outbreak. Yokoyama K, et al. Gene, 2000 Nov 27. PMID 11111050
    4. Complete genome sequence of enterohemorrhagic Escherichia coli O157:H7 and genomic comparison with a laboratory strain K-12. Hayashi T, et al. DNA Res, 2001 Feb 28. PMID 11258796

    GeneRIFs: Gene References Into Functions

    General protein information

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    Preferred Names
    restriction-modification system protein HsdS

    NCBI Reference Sequences (RefSeq)

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    Genome Annotation

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference assembly

    Genomic

    1. NC_002695.2 Reference assembly

      Range
      5437980..5439734 complement
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      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. NP_313333.1 restriction-modification system protein HsdS [Escherichia coli O157:H7 str. Sakai]

      See identical proteins and their annotated locations for NP_313333.1

      Status: PROVISIONAL

      UniProtKB/TrEMBL
      Q8XB79
      Conserved Domains (3) summary
      PRK09737
      Location:100 → 577
      PRK09737; type I restriction-modification system specificity subunit
      cd17253
      Location:387 → 578
      RMtype1_S_Eco933I-TRD2-CR2_like; Type I restriction-modification system specificity (S) subunit TRD-CR, similar to Escherichia coli O157:H7 EDL933 S subunit (S.Eco933I), Escherichia coli O104:H4 2009EL-2071 S subunit (S.Eco2071ORF3585P) TRD2-CR2, and Streptomyces species SirexAA-E S subu
      cl38903
      Location:244 → 287
      RMtype1_S_TRD-CR_like; Type I restriction-modification system specificity (S) subunit Target Recognition Domain-ConseRved domain (TRD-CR) and similar domains
    Nucleotide Protein
    Heading Accession and Version

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