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    ymfQ DUF2313 domain-containing protein YmfQ [ Escherichia coli str. K-12 substr. MG1655 ]

    Gene ID: 945707, updated on 3-Dec-2024

    Summary

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    Official Symbol
    ymfQ
    Official Full Name
    DUF2313 domain-containing protein YmfQ
    Primary source
    ECOCYC:G6597
    Locus tag
    b1153
    See related
    ASAP:ABE-0003874
    Gene type
    protein coding
    RefSeq status
    PROVISIONAL
    Organism
    Escherichia coli str. K-12 substr. MG1655 (strain: K-12, substrain: MG1655)
    Lineage
    Bacteria; Pseudomonadota; Gammaproteobacteria; Enterobacterales; Enterobacteriaceae; Escherichia
    Also known as
    ECK1139
    Summary
    YmfQ (COG3778, DUF2313) is related to many prophage proteins predicted to be tail proteins and is distantly related by psi-blast to gp15.1 (NCBI: [More information is available at EcoGene: EG14255].
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    Genomic context

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    Sequence:
    NC_000913.3 (1206913..1207497)

    NC_000913.3Genomic Context describing neighboring genes Neighboring gene pseudo Neighboring gene chimeric replication protein/phage terminase YmfN Neighboring gene pseudo Neighboring gene IPR020297 domain-containing protein YmfR Neighboring gene protein BeeE Neighboring gene pseudo Neighboring gene protein StfP Neighboring gene putative tail fiber assembly protein TfaP Neighboring gene putative tail fiber assembly protein TfaE

    Genomic regions, transcripts, and products

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    Genomic Sequence:
    NC_000913.3

    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. Analysis of the lambdoid prophage element e14 in the E. coli K-12 genome. Mehta P, et al. BMC Microbiol, 2004 Jan 20. PMID 14733619, Free PMC Article
    2. Prophages and bacterial genomics: what have we learned so far? Casjens S. Mol Microbiol, 2003 Jul. PMID 12886937
    3. Highly accurate genome sequences of Escherichia coli K-12 strains MG1655 and W3110. Hayashi K, et al. Mol Syst Biol, 2006. PMID 16738553, Free PMC Article
    4. The complete genome sequence of Escherichia coli K-12. Blattner FR, et al. Science, 1997 Sep 5. PMID 9278503
    5. Escherichia coli K-12: a cooperatively developed annotation snapshot--2005. Riley M, et al. Nucleic Acids Res, 2006. PMID 16397293, Free PMC Article

    GeneRIFs: Gene References Into Functions

    General protein information

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    Preferred Names
    DUF2313 domain-containing protein YmfQ

    NCBI Reference Sequences (RefSeq)

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    Genome Annotation

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference assembly

    Genomic

    1. NC_000913.3 Reference assembly

      Range
      1206913..1207497
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. NP_415671.1 DUF2313 domain-containing protein YmfQ [Escherichia coli str. K-12 substr. MG1655]

      See identical proteins and their annotated locations for NP_415671.1

      Status: PROVISIONAL

      UniProtKB/TrEMBL
      A0A6C9Q9Z6
      Conserved Domains (1) summary
      COG3778
      Location:3 → 194
      YmfQ; Uncharacterized protein YmfQ in lambdoid prophage, DUF2313 family [Mobilome: prophages, transposons]
    Nucleotide Protein
    Heading Accession and Version

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