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    paaY 2-hydroxycyclohepta-1,4,6-triene-1-carboxyl-CoA thioesterase [ Escherichia coli str. K-12 substr. MG1655 ]

    Gene ID: 945965, updated on 3-Dec-2024

    Summary

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    Official Symbol
    paaY
    Official Full Name
    2-hydroxycyclohepta-1,4,6-triene-1-carboxyl-CoA thioesterase
    Primary source
    ECOCYC:G6721
    Locus tag
    b1400
    See related
    ASAP:ABE-0004676
    Gene type
    protein coding
    RefSeq status
    PROVISIONAL
    Organism
    Escherichia coli str. K-12 substr. MG1655 (strain: K-12, substrain: MG1655)
    Lineage
    Bacteria; Pseudomonadota; Gammaproteobacteria; Enterobacterales; Enterobacteriaceae; Escherichia
    Also known as
    ECK1397; ydbZ
    Summary
    PaaY contains hexapeptide repeats. [More information is available at EcoGene: EG13747]. The paaY gene is part of the gene cluster required for growth on phenylacetate as the sole source of carbon in Escherichia coli W. [More information is available at EcoCyc: G6721].
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    Genomic context

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    Sequence:
    NC_000913.3 (1464471..1465061)

    NC_000913.3Genomic Context describing neighboring genes Neighboring gene phenylacetyl-CoA thioesterase Neighboring gene beta-ketoadipyl-CoA thiolase Neighboring gene phenylacetate-CoA ligase Neighboring gene DNA-binding transcriptional repressor PaaX Neighboring gene uncharacterized protein YnbG Neighboring gene pseudo Neighboring gene IS2 insertion element protein InsB Neighboring gene IS2 insertion element repressor InsA

    Genomic regions, transcripts, and products

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    Genomic Sequence:
    NC_000913.3

    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. Functional genomics by NMR spectroscopy. Phenylacetate catabolism in Escherichia coli. Ismail W, et al. Eur J Biochem, 2003 Jul. PMID 12846838
    2. An oxygenase that forms and deoxygenates toxic epoxide. Teufel R, et al. Nature, 2012 Mar 7. PMID 22398448
    3. Transcriptional regulation of the divergent paa catabolic operons for phenylacetic acid degradation in Escherichia coli. Ferrández A, et al. J Biol Chem, 2000 Apr 21. PMID 10766858
    4. Catabolism of phenylacetic acid in Escherichia coli. Characterization of a new aerobic hybrid pathway. Ferrández A, et al. J Biol Chem, 1998 Oct 2. PMID 9748275
    5. Highly accurate genome sequences of Escherichia coli K-12 strains MG1655 and W3110. Hayashi K, et al. Mol Syst Biol, 2006. PMID 16738553, Free PMC Article

    See all (7) citations in PubMed

    GeneRIFs: Gene References Into Functions

    General gene information

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    Homology

    Gene Ontology Provided by EcoCyc

    Function Evidence Code Pubs
    enables acyl-CoA hydrolase activity IDA
    Inferred from Direct Assay
    more info
    		 PubMed 
    enables transferase activity IEA
    Inferred from Electronic Annotation
    more info
    		  
    Process Evidence Code Pubs
    involved_in phenylacetate catabolic process IEA
    Inferred from Electronic Annotation
    more info
    		  

    General protein information

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    Preferred Names
    2-hydroxycyclohepta-1,4,6-triene-1-carboxyl-CoA thioesterase

    NCBI Reference Sequences (RefSeq)

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    Genome Annotation

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference assembly

    Genomic

    1. NC_000913.3 Reference assembly

      Range
      1464471..1465061
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. NP_415918.1 2-hydroxycyclohepta-1,4,6-triene-1-carboxyl-CoA thioesterase [Escherichia coli str. K-12 substr. MG1655]

      See identical proteins and their annotated locations for NP_415918.1

      Status: PROVISIONAL

      UniProtKB/TrEMBL
      A0A8S7TT16
      Conserved Domains (1) summary
      TIGR02287
      Location:3 → 195
      PaaY; phenylacetic acid degradation protein PaaY
    Nucleotide Protein
    Heading Accession and Version

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