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    ydbJ DUF333 domain-containing protein YdbJ [ Escherichia coli str. K-12 substr. MG1655 ]

    Gene ID: 4056027, updated on 3-Dec-2024

    Summary

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    Official Symbol
    ydbJ
    Official Full Name
    DUF333 domain-containing protein YdbJ
    Primary source
    ECOCYC:G0-10450
    Locus tag
    b4529
    See related
    ASAP:ABE-0285050
    Gene type
    protein coding
    RefSeq status
    PROVISIONAL
    Organism
    Escherichia coli str. K-12 substr. MG1655 (strain: K-12, substrain: MG1655)
    Lineage
    Bacteria; Pseudomonadota; Gammaproteobacteria; Enterobacterales; Enterobacteriaceae; Escherichia
    Also known as
    ECK1375
    Summary
    First 16 aa are predicted to be a type II signal peptide. [More information is available at EcoGene: EG13182].
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    Genomic context

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    Sequence:
    NC_000913.3 (1441058..1441324)

    NC_000913.3Genomic Context describing neighboring genes Neighboring gene ncRNA Neighboring gene putative pyruvate-flavodoxin oxidoreductase Neighboring gene lipoprotein implicated in Novobiocin resistance Neighboring gene D-lactate dehydrogenase Neighboring gene putative phospholipid transport factor YdbH Neighboring gene lipoprotein YnbE

    Genomic regions, transcripts, and products

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    Genomic Sequence:
    NC_000913.3

    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. A 570-kb DNA sequence of the Escherichia coli K-12 genome corresponding to the 28.0-40.1 min region on the linkage map. Aiba H, et al. DNA Res, 1996 Dec 31. PMID 9097039
    2. Prediction of lipoprotein signal peptides in Gram-negative bacteria. Juncker AS, et al. Protein Sci, 2003 Aug. PMID 12876315, Free PMC Article
    3. Fine-tuning the prediction of sequences cleaved by signal peptidase II: a curated set of proven and predicted lipoproteins of Escherichia coli K-12. Gonnet P, et al. Proteomics, 2004 Jun. PMID 15174130
    4. Highly accurate genome sequences of Escherichia coli K-12 strains MG1655 and W3110. Hayashi K, et al. Mol Syst Biol, 2006. PMID 16738553, Free PMC Article
    5. The complete genome sequence of Escherichia coli K-12. Blattner FR, et al. Science, 1997 Sep 5. PMID 9278503

    See all (6) citations in PubMed

    GeneRIFs: Gene References Into Functions

    General gene information

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    Homology

    General protein information

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    Preferred Names
    DUF333 domain-containing protein YdbJ

    NCBI Reference Sequences (RefSeq)

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    Genome Annotation

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference assembly

    Genomic

    1. NC_000913.3 Reference assembly

      Range
      1441058..1441324
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. YP_588453.1 DUF333 domain-containing protein YdbJ [Escherichia coli str. K-12 substr. MG1655]

      See identical proteins and their annotated locations for YP_588453.1

      Status: PROVISIONAL

      UniProtKB/Swiss-Prot
      P0ACW2
      Conserved Domains (1) summary
      COG3042
      Location:11 → 88
      Hlx; Putative hemolysin [General function prediction only]
    Nucleotide Protein
    Heading Accession and Version

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