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    yihR putative sulfoquinovose mutarotase YihR [ Escherichia coli str. K-12 substr. MG1655 ]

    Gene ID: 948375, updated on 3-Dec-2024

    Summary

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    Official Symbol
    yihR
    Official Full Name
    putative sulfoquinovose mutarotase YihR
    Primary source
    ECOCYC:EG11844
    Locus tag
    b3879
    See related
    ASAP:ABE-0012669
    Gene type
    protein coding
    RefSeq status
    PROVISIONAL
    Organism
    Escherichia coli str. K-12 substr. MG1655 (strain: K-12, substrain: MG1655)
    Lineage
    Bacteria; Pseudomonadota; Gammaproteobacteria; Enterobacterales; Enterobacteriaceae; Escherichia
    Also known as
    ECK3872; squR
    Summary
    galM, yphB and yihR are paralogs. [More information is available at EcoGene: EG11844]. YihR appears to be involved in biofilm formation. [More information is available at EcoCyc: EG11844].
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    Genomic context

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    Sequence:
    NC_000913.3 (4069475..4070401, complement)

    NC_000913.3Genomic Context describing neighboring genes Neighboring gene putative 2,3-dihydroxypropane-1-sulfonate export protein Neighboring gene sulfoquinovosidase Neighboring gene sulfoquinovose isomerase Neighboring gene 6-deoxy-6-sulfofructose-1-phosphate aldolase

    Genomic regions, transcripts, and products

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    Genomic Sequence:
    NC_000913.3

    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. Crystal structure of YihS in complex with D-mannose: structural annotation of Escherichia coli and Salmonella enterica yihS-encoded proteins to an aldose-ketose isomerase. Itoh T, et al. J Mol Biol, 2008 Apr 11. PMID 18328504
    2. Sulphoglycolysis in Escherichia coli K-12 closes a gap in the biogeochemical sulphur cycle. Denger K, et al. Nature, 2014 Mar 6. PMID 24463506
    3. Salmonella produces an O-antigen capsule regulated by AgfD and important for environmental persistence. Gibson DL, et al. J Bacteriol, 2006 Nov. PMID 17079680, Free PMC Article
    4. Analysis of the Escherichia coli genome. III. DNA sequence of the region from 87.2 to 89.2 minutes. Plunkett G 3rd, et al. Nucleic Acids Res, 1993 Jul 25. PMID 8346018, Free PMC Article
    5. Large-scale identification of protein-protein interaction of Escherichia coli K-12. Arifuzzaman M, et al. Genome Res, 2006 May. PMID 16606699, Free PMC Article

    See all (9) citations in PubMed

    GeneRIFs: Gene References Into Functions

    General gene information

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    Homology

    Gene Ontology Provided by EcoCyc

    Function Evidence Code Pubs
    enables aldose 1-epimerase activity IBA
    Inferred from Biological aspect of Ancestor
    more info
    		  
    enables carbohydrate binding IEA
    Inferred from Electronic Annotation
    more info
    		  
    enables isomerase activity IEA
    Inferred from Electronic Annotation
    more info
    		  
    Process Evidence Code Pubs
    acts_upstream_of_or_within 6-sulfoquinovose(1-) catabolic process IEP
    Inferred from Expression Pattern
    more info
    		 PubMed 
    involved_in carbohydrate metabolic process IEA
    Inferred from Electronic Annotation
    more info
    		  
    involved_in galactose catabolic process via UDP-galactose IBA
    Inferred from Biological aspect of Ancestor
    more info
    		  
    involved_in glucose metabolic process IBA
    Inferred from Biological aspect of Ancestor
    more info
    		  
    acts_upstream_of_or_within single-species biofilm formation IMP
    Inferred from Mutant Phenotype
    more info
    		 PubMed 

    General protein information

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    Preferred Names
    putative sulfoquinovose mutarotase YihR

    NCBI Reference Sequences (RefSeq)

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    Genome Annotation

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference assembly

    Genomic

    1. NC_000913.3 Reference assembly

      Range
      4069475..4070401 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. NP_418315.3 putative sulfoquinovose mutarotase YihR [Escherichia coli str. K-12 substr. MG1655]

      See identical proteins and their annotated locations for NP_418315.3

      Status: PROVISIONAL

      UniProtKB/TrEMBL
      A0A2X7EWU6, A0AAE9PYM6
      Conserved Domains (1) summary
      PRK15172
      Location:9 → 308
      PRK15172; aldose-1-epimerase
    Nucleotide Protein
    Heading Accession and Version

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