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    sgcR putative DNA-binding transcriptional regulator SgcR [ Escherichia coli str. K-12 substr. MG1655 ]

    Gene ID: 946830, updated on 3-Dec-2024

    Summary

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    Official Symbol
    sgcR
    Official Full Name
    putative DNA-binding transcriptional regulator SgcR
    Primary source
    ECOCYC:G7913
    Locus tag
    b4300
    See related
    ASAP:ABE-0014094
    Gene type
    protein coding
    RefSeq status
    PROVISIONAL
    Organism
    Escherichia coli str. K-12 substr. MG1655 (strain: K-12, substrain: MG1655)
    Lineage
    Bacteria; Pseudomonadota; Gammaproteobacteria; Enterobacterales; Enterobacteriaceae; Escherichia
    Also known as
    ECK4289; yjhJ
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    Genomic context

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    Sequence:
    NC_000913.3 (4526106..4526888, complement)

    NC_000913.3Genomic Context describing neighboring genes Neighboring gene putative 2-dehydro-3-deoxy-D-pentonate aldolase Neighboring gene putative DNA-binding transcriptional regulator YjhI Neighboring gene putative epimerase SgcE Neighboring gene putative PTS enzyme IIA component SgcA Neighboring gene ncRNA

    Genomic regions, transcripts, and products

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    Genomic Sequence:
    NC_000913.3

    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. The Universal Protein Resource (UniProt). Bairoch A, et al. Nucleic Acids Res, 2005 Jan 1. PMID 15608167, Free PMC Article
    2. The repertoire of DNA-binding transcriptional regulators in Escherichia coli K-12. Pérez-Rueda E, et al. Nucleic Acids Res, 2000 Apr 15. PMID 10734204, Free PMC Article
    3. Phylogenetic distribution of DNA-binding transcription factors in bacteria and archaea. Pérez-Rueda E, et al. Comput Biol Chem, 2004 Dec. PMID 15556475
    4. Analysis of the Escherichia coli genome VI: DNA sequence of the region from 92.8 through 100 minutes. Burland V, et al. Nucleic Acids Res, 1995 Jun 25. PMID 7610040, Free PMC Article
    5. Large-scale identification of protein-protein interaction of Escherichia coli K-12. Arifuzzaman M, et al. Genome Res, 2006 May. PMID 16606699, Free PMC Article

    See all (8) citations in PubMed

    GeneRIFs: Gene References Into Functions

    General gene information

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    Homology

    Gene Ontology Provided by EcoCyc

    Function Evidence Code Pubs
    enables DNA binding IEA
    Inferred from Electronic Annotation
    more info
    		  
    enables DNA-binding transcription factor activity IEA
    Inferred from Electronic Annotation
    more info
    		  
    enables cis-regulatory region sequence-specific DNA binding IBA
    Inferred from Biological aspect of Ancestor
    more info
    		  
    enables ligand-activated transcription factor activity IBA
    Inferred from Biological aspect of Ancestor
    more info
    		  
    Process Evidence Code Pubs
    involved_in regulation of DNA-templated transcription IBA
    Inferred from Biological aspect of Ancestor
    more info
    		  
    involved_in regulation of DNA-templated transcription IEA
    Inferred from Electronic Annotation
    more info
    		  

    General protein information

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    Preferred Names
    putative DNA-binding transcriptional regulator SgcR

    NCBI Reference Sequences (RefSeq)

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    Genome Annotation

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference assembly

    Genomic

    1. NC_000913.3 Reference assembly

      Range
      4526106..4526888 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. NP_418720.1 putative DNA-binding transcriptional regulator SgcR [Escherichia coli str. K-12 substr. MG1655]

      See identical proteins and their annotated locations for NP_418720.1

      Status: PROVISIONAL

      UniProtKB/TrEMBL
      A0A2W6PG49
      Conserved Domains (1) summary
      COG1349
      Location:4 → 250
      GlpR; DNA-binding transcriptional regulator of sugar metabolism, DeoR/GlpR family [Transcription, Carbohydrate transport and metabolism]
    Nucleotide Protein
    Heading Accession and Version

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