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    perR putative transcriptional regulator PerR [ Escherichia coli str. K-12 substr. MG1655 ]

    Gene ID: 945417, updated on 3-Dec-2024

    Summary

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    Official Symbol
    perR
    Official Full Name
    putative transcriptional regulator PerR
    Primary source
    ECOCYC:G6129
    Locus tag
    b0254
    See related
    ASAP:ABE-0000862
    Gene type
    protein coding
    RefSeq status
    PROVISIONAL
    Organism
    Escherichia coli str. K-12 substr. MG1655 (strain: K-12, substrain: MG1655)
    Lineage
    Bacteria; Pseudomonadota; Gammaproteobacteria; Enterobacterales; Enterobacteriaceae; Escherichia
    Also known as
    ECK0256
    Summary
    Function identified in Genbank U57080: [More information is available at EcoGene: EG13340]. The PerR transcriptional regulator, which appears to belong to the LysR-family , has been widely analyzed in B. subtilis, where several DNA binding sites recognized by PerR were identified . [More information is available at EcoCyc: G6129].
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    Genomic context

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    Sequence:
    NC_000913.3 (269289..270182, complement)

    NC_000913.3Genomic Context describing neighboring genes Neighboring gene DUF932 domain-containing protein YafZ Neighboring gene putative GTP-binding protein YkfA Neighboring gene pseudo Neighboring gene IS30 family transposase Neighboring gene ncRNA

    Genomic regions, transcripts, and products

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    Genomic Sequence:
    NC_000913.3

    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. The Universal Protein Resource (UniProt). Bairoch A, et al. Nucleic Acids Res, 2005 Jan 1. PMID 15608167, Free PMC Article
    2. Studying protein complexes by the yeast two-hybrid system. Rajagopala SV, et al. Methods, 2012 Dec. PMID 22841565, Free PMC Article
    3. Phylogenetic distribution of DNA-binding transcription factors in bacteria and archaea. Pérez-Rueda E, et al. Comput Biol Chem, 2004 Dec. PMID 15556475
    4. Prophages and bacterial genomics: what have we learned so far? Casjens S. Mol Microbiol, 2003 Jul. PMID 12886937
    5. The binary protein-protein interaction landscape of Escherichia coli. Rajagopala SV, et al. Nat Biotechnol, 2014 Mar. PMID 24561554, Free PMC Article

    See all (8) citations in PubMed

    GeneRIFs: Gene References Into Functions

    Interactions

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    Products Interactant Other Gene Complex Source Pubs Description

    General gene information

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    Homology

    Gene Ontology Provided by EcoCyc

    Function Evidence Code Pubs
    enables DNA binding IEA
    Inferred from Electronic Annotation
    more info
    		  
    enables DNA-binding transcription factor activity IBA
    Inferred from Biological aspect of Ancestor
    more info
    		  
    enables DNA-binding transcription factor activity IEA
    Inferred from Electronic Annotation
    more info
    		  
    enables identical protein binding IPI
    Inferred from Physical Interaction
    more info
    		 PubMed 
    enables sequence-specific DNA binding IBA
    Inferred from Biological aspect of Ancestor
    more info
    		  
    Process Evidence Code Pubs
    involved_in DNA-templated transcription IBA
    Inferred from Biological aspect of Ancestor
    more info
    		  
    involved_in regulation of DNA-templated transcription IEA
    Inferred from Electronic Annotation
    more info
    		  

    General protein information

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    Preferred Names
    putative transcriptional regulator PerR

    NCBI Reference Sequences (RefSeq)

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    Genome Annotation

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference assembly

    Genomic

    1. NC_000913.3 Reference assembly

      Range
      269289..270182 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. NP_414788.1 putative transcriptional regulator PerR [Escherichia coli str. K-12 substr. MG1655]

      See identical proteins and their annotated locations for NP_414788.1

      Status: PROVISIONAL

      UniProtKB/Swiss-Prot
      Q57083
      Conserved Domains (1) summary
      PRK11139
      Location:8 → 292
      PRK11139; DNA-binding transcriptional activator GcvA; Provisional
    Nucleotide Protein
    Heading Accession and Version

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