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    intD putative integrase [ Escherichia coli str. K-12 substr. MG1655 ]

    Gene ID: 947162, updated on 17-Dec-2024

    Summary

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    Official Symbol
    intD
    Official Full Name
    putative integrase
    Primary source
    ECOCYC:EG10507
    Locus tag
    b0537
    See related
    ASAP:ABE-0001842
    Gene type
    protein coding
    RefSeq status
    PROVISIONAL
    Organism
    Escherichia coli str. K-12 substr. MG1655 (strain: K-12, substrain: MG1655)
    Lineage
    Bacteria; Pseudomonadota; Gammaproteobacteria; Enterobacterales; Enterobacteriaceae; Escherichia
    Also known as
    ECK0530; int
    Summary
    IntD is the predicted integrase of the cryptic lambdoid prophage DLP12 . intD can be transcribed in vivo. [More information is available at EcoCyc: EG10507].
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    Genomic context

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    Sequence:
    NC_000913.3 (564815..565978, complement)

    NC_000913.3Genomic Context describing neighboring genes Neighboring gene putative LuxR family transcriptional regulator FimZ Neighboring gene tRNA-Arg Neighboring gene pseudo Neighboring gene pseudo Neighboring gene pseudo Neighboring gene pseudo

    Genomic regions, transcripts, and products

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    Genomic Sequence:
    NC_000913.3

    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. Characterization of the cryptic lambdoid prophage DLP12 of Escherichia coli and overlap of the DLP12 integrase gene with the tRNA gene argU. Lindsey DF, et al. J Bacteriol, 1989 Nov. PMID 2553674, Free PMC Article
    2. Nucleotide sequence of the region encompassing the int gene of a cryptic prophage and the dna Y gene flanked by a curved DNA sequence of Escherichia coli K12. Muramatsu S, et al. Mol Gen Genet, 1990 Jan. PMID 2183007
    3. Prophages and bacterial genomics: what have we learned so far? Casjens S. Mol Microbiol, 2003 Jul. PMID 12886937
    4. Protein abundance profiling of the Escherichia coli cytosol. Ishihama Y, et al. BMC Genomics, 2008 Feb 27. PMID 18304323, Free PMC Article
    5. The binary protein-protein interaction landscape of Escherichia coli. Rajagopala SV, et al. Nat Biotechnol, 2014 Mar. PMID 24561554, Free PMC Article

    See all (8) citations in PubMed

    GeneRIFs: Gene References Into Functions

    Interactions

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    Products Interactant Other Gene Complex Source Pubs Description

    General gene information

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    Homology

    Gene Ontology Provided by EcoCyc

    Function Evidence Code Pubs
    enables DNA binding IEA
    Inferred from Electronic Annotation
    more info
    		  
    enables prophage integrase activity ISS
    Inferred from Sequence or Structural Similarity
    more info
    		 PubMed 
    enables site-specific recombinase activity IBA
    Inferred from Biological aspect of Ancestor
    more info
    		  
    Process Evidence Code Pubs
    involved_in DNA integration IEA
    Inferred from Electronic Annotation
    more info
    		  
    involved_in DNA recombination IBA
    Inferred from Biological aspect of Ancestor
    more info
    		  
    involved_in DNA recombination IEA
    Inferred from Electronic Annotation
    more info
    		  
    involved_in chromosome segregation IBA
    Inferred from Biological aspect of Ancestor
    more info
    		  
    involved_in establishment of integrated proviral latency IEA
    Inferred from Electronic Annotation
    more info
    		  
    involved_in symbiont entry into host cell IEA
    Inferred from Electronic Annotation
    more info
    		  
    involved_in viral genome integration into host DNA IEA
    Inferred from Electronic Annotation
    more info
    		  
    Component Evidence Code Pubs
    located_in cytosol IDA
    Inferred from Direct Assay
    more info
    		 PubMed 

    General protein information

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    Preferred Names
    putative integrase

    NCBI Reference Sequences (RefSeq)

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    Genome Annotation

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference assembly

    Genomic

    1. NC_000913.3 Reference assembly

      Range
      564815..565978 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. NP_415069.1 putative integrase [Escherichia coli str. K-12 substr. MG1655]

      See identical proteins and their annotated locations for NP_415069.1

      Status: PROVISIONAL

      UniProtKB/TrEMBL
      A0A2X3M322
      Conserved Domains (1) summary
      cd00796
      Location:182 → 351
      INT_Rci_Hp1_C; Shufflon-specific DNA recombinase Rci and Bacteriophage Hp1_like integrase, C-terminal catalytic domain
    Nucleotide Protein
    Heading Accession and Version

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