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    dgoR DNA-binding transcriptional regulator DgoR [ Escherichia coli str. K-12 substr. MG1655 ]

    Gene ID: 2847767, updated on 3-Dec-2024

    Summary

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    Official Symbol
    dgoR
    Official Full Name
    DNA-binding transcriptional regulator DgoR
    Primary source
    ECOCYC:G7789
    Locus tag
    b4479
    See related
    ASAP:ABE-0174108
    Gene type
    protein coding
    RefSeq status
    PROVISIONAL
    Organism
    Escherichia coli str. K-12 substr. MG1655 (strain: K-12, substrain: MG1655)
    Lineage
    Bacteria; Pseudomonadota; Gammaproteobacteria; Enterobacterales; Enterobacteriaceae; Escherichia
    Also known as
    b3694; b3695; ECK3687; yidW
    Summary
    DgoR is a GntR-type DNA-binding transcriptional regulator. [More information is available at EcoGene: EG11718]. DgoR belongs to the FadR family of transcriptional regulators . [More information is available at EcoCyc: G7789].
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    Genomic context

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    Sequence:
    NC_000913.3 (3874471..3875160, complement)

    NC_000913.3Genomic Context describing neighboring genes Neighboring gene colicin M resistance protein Neighboring gene D-galactonate:H(+) symporter Neighboring gene D-galactonate dehydratase Neighboring gene 2-dehydro-3-deoxy-6-phosphogalactonate aldolase Neighboring gene 2-dehydro-3-deoxygalactonokinase Neighboring gene putative lipoprotein YidX Neighboring gene sugar phosphatase YidA

    Genomic regions, transcripts, and products

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    Genomic Sequence:
    NC_000913.3

    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. Systematic approach for dissecting the molecular mechanisms of transcriptional regulation in bacteria. Belliveau NM, et al. Proc Natl Acad Sci U S A, 2018 May 22. PMID 29728462, Free PMC Article
    2. A functionally diverse enzyme superfamily that abstracts the alpha protons of carboxylic acids. Babbitt PC, et al. Science, 1995 Feb 24. PMID 7855594
    3. Identification of genes affecting lycopene accumulation in Escherichia coli using a shot-gun method. Kang MJ, et al. Biotechnol Bioeng, 2005 Sep 5. PMID 15898075
    4. The utilisation of D-galactonate and D-2-oxo-3-deoxygalactonate by Escherichia coli K-12. Biochemical and genetical studies. Cooper RA. Arch Microbiol, 1978 Aug 1. PMID 211976
    5. D-Galactonate utilisation by enteric bacteria. The catabolic pathway in Escherichia coli. Deacon J, et al. FEBS Lett, 1977 May 15. PMID 324806

    See all (14) citations in PubMed

    GeneRIFs: Gene References Into Functions

    Interactions

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    Products Interactant Other Gene Complex Source Pubs Description

    General gene information

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    Homology

    Gene Ontology Provided by EcoCyc

    Function Evidence Code Pubs
    enables DNA binding IDA
    Inferred from Direct Assay
    more info
    		 PubMed 
    enables DNA binding IEA
    Inferred from Electronic Annotation
    more info
    		  
    enables DNA-binding transcription factor activity IEA
    Inferred from Electronic Annotation
    more info
    		  
    enables DNA-binding transcription repressor activity IMP
    Inferred from Mutant Phenotype
    more info
    		 PubMed 
    enables cis-regulatory region sequence-specific DNA binding IDA
    Inferred from Direct Assay
    more info
    		 PubMed 
    enables identical protein binding IDA
    Inferred from Direct Assay
    more info
    		 PubMed 
    enables ligand-activated transcription factor activity IDA
    Inferred from Direct Assay
    more info
    		 PubMed 
    enables metal ion binding IEA
    Inferred from Electronic Annotation
    more info
    		  
    enables transcription cis-regulatory region binding IDA
    Inferred from Direct Assay
    more info
    		 PubMed 
    Process Evidence Code Pubs
    acts_upstream_of_or_within negative regulation of DNA-templated transcription initiation IMP
    Inferred from Mutant Phenotype
    more info
    		 PubMed 
    involved_in regulation of DNA-templated transcription IEA
    Inferred from Electronic Annotation
    more info
    		  

    General protein information

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    Preferred Names
    DNA-binding transcriptional regulator DgoR

    NCBI Reference Sequences (RefSeq)

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    Genome Annotation

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference assembly

    Genomic

    1. NC_000913.3 Reference assembly

      Range
      3874471..3875160 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. YP_026239.1 DNA-binding transcriptional regulator DgoR [Escherichia coli str. K-12 substr. MG1655]

      See identical proteins and their annotated locations for YP_026239.1

      Status: PROVISIONAL

      UniProtKB/TrEMBL
      A0A485J6M7
      Conserved Domains (1) summary
      COG2186
      Location:2 → 229
      FadR; DNA-binding transcriptional regulator, FadR family [Transcription]
    Nucleotide Protein
    Heading Accession and Version

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