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    ygcA 23S rRNA (uracil(1939)-C(5))-methyltransferase RlmD [ Pseudomonas aeruginosa PAO1 ]

    Gene ID: 881477, updated on 11-Sep-2024

    Summary

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    Gene symbol
    ygcA
    Gene description
    23S rRNA (uracil(1939)-C(5))-methyltransferase RlmD
    Locus tag
    PA0933
    Gene type
    protein coding
    RefSeq status
    PROVISIONAL
    Organism
    Pseudomonas aeruginosa PAO1 (strain: PAO1)
    Lineage
    Bacteria; Pseudomonadota; Gammaproteobacteria; Pseudomonadales; Pseudomonadaceae; Pseudomonas
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    Genomic context

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    Sequence:
    NC_002516.2 (1021616..1022968)

    NC_002516.2Genomic Context describing neighboring genes Neighboring gene outer membrane receptor FepA Neighboring gene cysteine synthase B Neighboring gene GTP pyrophosphokinase Neighboring gene nucleoside triphosphate pyrophosphohydrolase

    Genomic regions, transcripts, and products

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    Genomic Sequence:
    NC_002516.2

    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. Pseudomonas Genome Database: facilitating user-friendly, comprehensive comparisons of microbial genomes. Winsor GL, et al. Nucleic Acids Res, 2009 Jan. PMID 18978025, Free PMC Article
    2. Defining the Pseudomonas aeruginosa SOS response and its role in the global response to the antibiotic ciprofloxacin. Cirz RT, et al. J Bacteriol, 2006 Oct. PMID 17015649, Free PMC Article
    3. Cystic fibrosis sputum supports growth and cues key aspects of Pseudomonas aeruginosa physiology. Palmer KL, et al. J Bacteriol, 2005 Aug. PMID 16030221, Free PMC Article
    4. A cystic fibrosis epidemic strain of Pseudomonas aeruginosa displays enhanced virulence and antimicrobial resistance. Salunkhe P, et al. J Bacteriol, 2005 Jul. PMID 15995206, Free PMC Article
    5. Effect of anaerobiosis and nitrate on gene expression in Pseudomonas aeruginosa. Filiatrault MJ, et al. Infect Immun, 2005 Jun. PMID 15908409, Free PMC Article

    See all (10) citations in PubMed

    GeneRIFs: Gene References Into Functions

    General gene information

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    Homology

    General protein information

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    Preferred Names
    23S rRNA (uracil(1939)-C(5))-methyltransferase RlmD
    NP_249624.1
    • 'Product name confidence: class 3 (Function proposed based on presence of conserved amino acid motif, structural feature or limited sequence similarity to an experimentally studied gene)'

    NCBI Reference Sequences (RefSeq)

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    Genome Annotation

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference assembly

    Genomic

    1. NC_002516.2 Reference assembly

      Range
      1021616..1022968
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. NP_249624.1 23S rRNA (uracil(1939)-C(5))-methyltransferase RlmD [Pseudomonas aeruginosa PAO1]

      See identical proteins and their annotated locations for NP_249624.1

      Status: PROVISIONAL

      Conserved Domains (1) summary
      PRK13168
      Location:7 → 450
      rumA; 23S rRNA (uracil(1939)-C(5))-methyltransferase RlmD
    Nucleotide Protein
    Heading Accession and Version
    Protein Accession Links
    GenPept Link UniProtKB Link
    Q9I525.1

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