U.S. flag

An official website of the United States government

Format

Send to:

Choose Destination

Links from GEO Profiles

    • Showing Current items.

    algJ alginate o-acetylase AlgJ [ Pseudomonas aeruginosa PAO1 ]

    Gene ID: 878716, updated on 24-Aug-2024

    Summary

    Go to the top of the page Help
    Gene symbol
    algJ
    Gene description
    alginate o-acetylase AlgJ
    Locus tag
    PA3549
    Gene type
    protein coding
    RefSeq status
    PROVISIONAL
    Organism
    Pseudomonas aeruginosa PAO1 (strain: PAO1)
    Lineage
    Bacteria; Pseudomonadota; Gammaproteobacteria; Pseudomonadales; Pseudomonadaceae; Pseudomonas
    NEW
    Try the new Gene table
    Try the new Transcript table

    Genomic context

    Go to the top of the page Help
    Sequence:
    NC_002516.2 (3975936..3977111)

    NC_002516.2Genomic Context describing neighboring genes Neighboring gene alginate lyase Neighboring gene alginate o-acetylase AlgI Neighboring gene alginate o-acetyltransferase AlgF Neighboring gene bifunctional mannose-1-phosphate guanylyltransferase/mannose-6-phosphate isomerase

    Genomic regions, transcripts, and products

    Go to the top of the page Help
    Genomic Sequence:
    NC_002516.2

    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

    Go to the top of the pageHelp

    Related articles in PubMed

    1. P. aeruginosa SGNH hydrolase-like proteins AlgJ and AlgX have similar topology but separate and distinct roles in alginate acetylation. Baker P, et al. PLoS Pathog, 2014 Aug. PMID 25165982, Free PMC Article
    2. Identification of algI and algJ in the Pseudomonas aeruginosa alginate biosynthetic gene cluster which are required for alginate O acetylation. Franklin MJ, et al. J Bacteriol, 1996 Apr. PMID 8636017, Free PMC Article
    3. Mutant analysis and cellular localization of the AlgI, AlgJ, and AlgF proteins required for O acetylation of alginate in Pseudomonas aeruginosa. Franklin MJ, et al. J Bacteriol, 2002 Jun. PMID 12003941, Free PMC Article
    4. Pseudomonas Genome Database: facilitating user-friendly, comprehensive comparisons of microbial genomes. Winsor GL, et al. Nucleic Acids Res, 2009 Jan. PMID 18978025, Free PMC Article
    5. Defining the Pseudomonas aeruginosa SOS response and its role in the global response to the antibiotic ciprofloxacin. Cirz RT, et al. J Bacteriol, 2006 Oct. PMID 17015649, Free PMC Article

    See all (13) citations in PubMed

    GeneRIFs: Gene References Into Functions

    What's a GeneRIF?
    1. Our results suggest that the annotated O-acetyltransferases AlgJ and AlgX have separate and distinct roles in O-acetylation.
      Title: P. aeruginosa SGNH hydrolase-like proteins AlgJ and AlgX have similar topology but separate and distinct roles in alginate acetylation.
    Submit: New GeneRIF Correction

    Pathways from PubChem

    Go to the top of the page

    General gene information

    Go to the top of the page Help

    Homology

    Gene Ontology Provided by PseudoCAP

    Process Evidence Code Pubs
    acts_upstream_of_or_within alginic acid acetylation IDA
    Inferred from Direct Assay
    more info
    		 PubMed 
    acts_upstream_of_or_within alginic acid acetylation IMP
    Inferred from Mutant Phenotype
    more info
    		 PubMed 
    acts_upstream_of_or_within alginic acid biosynthetic process IDA
    Inferred from Direct Assay
    more info
    		 PubMed 
    acts_upstream_of_or_within response to stimulus IDA
    Inferred from Direct Assay
    more info
    		 PubMed 

    General protein information

    Go to the top of the page Help
    Preferred Names
    alginate o-acetylase AlgJ
    NP_252239.1
    • Product name confidence: class 1 (Function experimentally demonstrated in P. aeruginosa)

    NCBI Reference Sequences (RefSeq)

    Go to the top of the page Help

    NEW Try the new Transcript table

    Genome Annotation

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference assembly

    Genomic

    1. NC_002516.2 Reference assembly

      Range
      3975936..3977111
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. NP_252239.1 alginate o-acetylase AlgJ [Pseudomonas aeruginosa PAO1]

      See identical proteins and their annotated locations for NP_252239.1

      Status: PROVISIONAL

      UniProtKB/Swiss-Prot
      Q51393
      Conserved Domains (1) summary
      cd14442
      Location:47 → 374
      AlgJ_like; putative alginate O-acetyltranferases AlgJ, AlgV, and similar proteins
    Nucleotide Protein
    Heading Accession and Version
    Protein Accession Links
    GenPept Link UniProtKB Link
    Q51393.1

    Gene LinkOut

    The following LinkOut resources are supplied by external providers. These providers are responsible for maintaining the links.

    Molecular Biology Databases