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    CT83 cancer/testis antigen 83 [ Homo sapiens (human) ]

    Gene ID: 203413, updated on 27-Nov-2024

    Summary

    Official Symbol
    CT83provided by HGNC
    Official Full Name
    cancer/testis antigen 83provided by HGNC
    Primary source
    HGNC:HGNC:33494
    See related
    Ensembl:ENSG00000204019 MIM:300625; AllianceGenome:HGNC:33494
    Gene type
    protein coding
    RefSeq status
    VALIDATED
    Organism
    Homo sapiens
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini; Catarrhini; Hominidae; Homo
    Also known as
    KKLC1; CXorf61; KK-LC-1
    Summary
    Located in nucleus. [provided by Alliance of Genome Resources, Nov 2024]
    Expression
    Restricted expression toward testis (RPKM 15.4) See more
    Orthologs
    NEW
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    Try the new Transcript table

    Genomic context

    See CT83 in Genome Data Viewer
    Location:
    Xq23
    Exon count:
    2
    Annotation release Status Assembly Chr Location
    RS_2024_08 current GRCh38.p14 (GCF_000001405.40) X NC_000023.11 (116461686..116462976, complement)
    RS_2024_08 current T2T-CHM13v2.0 (GCF_009914755.1) X NC_060947.1 (114871302..114872590, complement)
    RS_2024_09 previous assembly GRCh37.p13 (GCF_000001405.25) X NC_000023.10 (115592853..115594137, complement)

    Chromosome X - NC_000023.11Genomic Context describing neighboring genes Neighboring gene RNA, U6 small nuclear 154, pseudogene Neighboring gene solute carrier family 6 member 14 Neighboring gene SLC6A14 pseudogene 1 Neighboring gene SLC6A14 pseudogene 2

    Genomic regions, transcripts, and products

    Expression

    • Project title: HPA RNA-seq normal tissues
    • Description: RNA-seq was performed of tissue samples from 95 human individuals representing 27 different tissues in order to determine tissue-specificity of all protein-coding genes
    • BioProject: PRJEB4337
    • Publication: PMID 24309898
    • Analysis date: Wed Apr 4 07:08:55 2018

    Bibliography

    GeneRIFs: Gene References Into Functions

    What's a GeneRIF?

    General protein information

    Preferred Names
    kita-kyushu lung cancer antigen 1

    NCBI Reference Sequences (RefSeq)

    NEW Try the new Transcript table

    RefSeqs maintained independently of Annotated Genomes

    These reference sequences exist independently of genome builds. Explain

    These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

    mRNA and Protein(s)

    1. NM_001017978.4NP_001017978.1  kita-kyushu lung cancer antigen 1

      See identical proteins and their annotated locations for NP_001017978.1

      Status: VALIDATED

      Source sequence(s)
      AC241580, AK026566
      Consensus CDS
      CCDS35372.1
      UniProtKB/Swiss-Prot
      Q5H943
      Related
      ENSP00000360961.4, ENST00000371894.5
      Conserved Domains (1) summary
      pfam15204
      Location:25109
      KKLCAg1; Kita-kyushu lung cancer antigen 1

    RefSeqs of Annotated Genomes: GCF_000001405.40-RS_2024_08

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference GRCh38.p14 Primary Assembly

    Genomic

    1. NC_000023.11 Reference GRCh38.p14 Primary Assembly

      Range
      116461686..116462976 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    Alternate T2T-CHM13v2.0

    Genomic

    1. NC_060947.1 Alternate T2T-CHM13v2.0

      Range
      114871302..114872590 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)